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D3DHL1 (D3DHL1_HYDTT) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tufA1 EMBL BAI69313.1
Synonyms:tuf HAMAP-Rule MF_00118, tufA2 EMBL BAI69326.1
Ordered Locus Names:HTH_0853 EMBL BAI69313.1, HTH_0866 EMBL BAI69326.1, Hydth_0853 EMBL ADO45250.1, Hydth_0866 EMBL ADO45263.1
OrganismHydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) [Complete proteome] [HAMAP]
Taxonomic identifier608538 [NCBI]
Taxonomic lineageBacteriaAquificaeAquificalesAquificaceaeHydrogenobacter

Protein attributes

Sequence length405 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding85 – 895GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding140 – 1434GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D3DHL1 [UniParc].

Last modified March 23, 2010. Version 1.
Checksum: 159ADE82C8DFF133

FASTA40544,728
        10         20         30         40         50         60 
MAKEKFIREK EHVNVGTIGH VDHGKSTLTS AITCVLAAGV LPGGKAKCTK YEEIDKAPEE 

        70         80         90        100        110        120 
KERGITINIT HVEYETPKRH YAHVDCPGHA DYIKNMITGA AQMDGAILVV SAADGPMPQT 

       130        140        150        160        170        180 
REHVLLARQV NVPYIVVFMN KCDMVDDPEL LDLVELEVRE LLSKYEFPGD EVPVIRGSAL 

       190        200        210        220        230        240 
GALQELEQGK PDRWCNAIVE LLKAMDEYVP TPVREADKPF LMPIEDVFSI SGRGTVVTGR 

       250        260        270        280        290        300 
VERGVLKPGE EVEIVGIREE PLKTVATSIE MFRKILDEAL PGDNVGVLLR GVGKDDVERG 

       310        320        330        340        350        360 
QVLAKPGTVK PHKRFRAQVY VLSKEEGGRH TPFFVNYRPQ FYFRTADVTG TVVKLPEGQE 

       370        380        390        400 
MVMPGDNVEL EVELIQPVAM EEGLRFAIRE GGRTVGAGVV TQILD 

« Hide

References

[1]"Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6."
Arai H., Kanbe H., Ishii M., Igarashi Y.
J. Bacteriol. 192:2651-2652(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 6534 / IAM 12695 / TK-6 [Tokyo] and TK-6.
[2]"Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6)."
US DOE Joint Genome Institute (JGI-PGF)
Zeytun A., Sikorski J., Nolan M., Lapidus A., Lucas S., Han J., Tice H., Cheng J., Tapia R., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Ovchinnikova G., Pati A., Chen A. expand/collapse author list , Palaniappan K., Ngatchou O., Land M., Hauser L., Chang Y., Jeffries C., Han C., Detter J., Ubler S., Rohde M., Tindall B., Wirth R., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Klenk H., Kyrpides N.
Stand. Genomic Sci. 4:131-143(2011)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 6534 / IAM 12695 / TK-6 [JGI] and TK-6 EMBL ADO45250.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002221 Genomic DNA. Translation: ADO45250.1.
CP002221 Genomic DNA. Translation: ADO45263.1.
AP011112 Genomic DNA. Translation: BAI69313.1.
AP011112 Genomic DNA. Translation: BAI69326.1.
RefSeqYP_003432514.1. NC_013799.1.
YP_003432527.1. NC_013799.1.
YP_005511543.1. NC_017161.1.
YP_005511556.1. NC_017161.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO45250; ADO45250; Hydth_0853.
ADO45263; ADO45263; Hydth_0866.
BAI69313; BAI69313; HTH_0853.
BAI69326; BAI69326; HTH_0866.
GeneID12100996.
12101010.
8773839.
8773860.
KEGGhte:Hydth_0853.
hte:Hydth_0866.
hth:HTH_0853.
hth:HTH_0866.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.
OMATIIPHTE.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3DHL1_HYDTT
AccessionPrimary (citable) accession number: D3DHL1
Entry history
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: June 11, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)