Elongation factor Tu - Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)

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D3DHL1 (D3DHL1_HYDTT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 26. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Recommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118

Gene names

Name:	tufA1 EMBL BAI69313.1
Synonyms:	tuf HAMAP-Rule MF_00118, tufA2 EMBL BAI69326.1
Ordered Locus Names:	HTH_0853, HTH_0866, Hydth_0853, Hydth_0866

Organism

Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) [Complete proteome] [HAMAP]

Taxonomic identifier

608538 [NCBI]

Taxonomic lineage

Bacteria › Aquificae › Aquificales › Aquificaceae › Hydrogenobacter ›

Protein attributes

Sequence length	405 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118
Subunit structure	Monomer By similarity. HAMAP-Rule MF_00118
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00118.
Sequence similarities	Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm HAMAP-Rule MF_00118
Ligand	GTP-binding RuleBase RU000323 HAMAP-Rule MF_00118 Nucleotide-binding
Molecular function	Elongation factor RuleBase RU000325 HAMAP-Rule MF_00118 EMBL BAI69313.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	GTP catabolic process Inferred from electronic annotation. Source: GOC
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	GTP binding Inferred from electronic annotation. Source: HAMAP GTPase activity Inferred from electronic annotation. Source: InterPro translation elongation factor activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Nucleotide binding

19 – 26

GTP By similarity HAMAP-Rule MF_00118

Nucleotide binding

85 – 89

GTP By similarity HAMAP-Rule MF_00118

Nucleotide binding

140 – 143

GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence

Length

Mass (Da)

Tools

D3DHL1 [UniParc].

Last modified March 23, 2010. Version 1.
Checksum: 159ADE82C8DFF133
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FASTA

405

44,728

        10         20         30         40         50         60 
MAKEKFIREK EHVNVGTIGH VDHGKSTLTS AITCVLAAGV LPGGKAKCTK YEEIDKAPEE 

        70         80         90        100        110        120 
KERGITINIT HVEYETPKRH YAHVDCPGHA DYIKNMITGA AQMDGAILVV SAADGPMPQT 

       130        140        150        160        170        180 
REHVLLARQV NVPYIVVFMN KCDMVDDPEL LDLVELEVRE LLSKYEFPGD EVPVIRGSAL 

       190        200        210        220        230        240 
GALQELEQGK PDRWCNAIVE LLKAMDEYVP TPVREADKPF LMPIEDVFSI SGRGTVVTGR 

       250        260        270        280        290        300 
VERGVLKPGE EVEIVGIREE PLKTVATSIE MFRKILDEAL PGDNVGVLLR GVGKDDVERG 

       310        320        330        340        350        360 
QVLAKPGTVK PHKRFRAQVY VLSKEEGGRH TPFFVNYRPQ FYFRTADVTG TVVKLPEGQE 

       370        380        390        400 
MVMPGDNVEL EVELIQPVAM EEGLRFAIRE GGRTVGAGVV TQILD

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6." Arai H., Kanbe H., Ishii M., Igarashi Y. J. Bacteriol. 192:2651-2652(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 6534 / IAM 12695 / TK-6 [Tokyo] and TK-6.
[2]	"The complete genome of Hydrogenobacter thermophilus DSM 6534." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Zeytun A., Detter J.C., Tapia R., Han C., Larimer F. Eisen J.A. Submitted (SEP-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: TK-6.
[3]	"Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6)." US DOE Joint Genome Institute (JGI-PGF) Zeytun A., Sikorski J., Nolan M., Lapidus A., Lucas S., Han J., Tice H., Cheng J., Tapia R., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Ovchinnikova G., Pati A., Chen A. Kyrpides N. Stand. Genomic Sci. 4:131-143(2011) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 6534 / IAM 12695 / TK-6 [JGI].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002221 Genomic DNA. Translation: ADO45250.1. CP002221 Genomic DNA. Translation: ADO45263.1. AP011112 Genomic DNA. Translation: BAI69313.1. AP011112 Genomic DNA. Translation: BAI69326.1.
RefSeq	YP_003432514.1. NC_013799.1. YP_003432527.1. NC_013799.1. YP_005511543.1. NC_017161.1. YP_005511556.1. NC_017161.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADO45250; ADO45250; Hydth_0853. ADO45263; ADO45263; Hydth_0866. BAI69313; BAI69313; HTH_0853. BAI69326; BAI69326; HTH_0866.
GeneID	12100996. 12101010. 8773839. 8773860.
KEGG	hte:Hydth_0853. hte:Hydth_0866. hth:HTH_0853. hth:HTH_0866.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000229290.
KO	K02358.
OMA	CEFVGYN.
Family and domain databases
HAMAP	MF_00118_B. EF_Tu_B.
InterPro	IPR000795. EF_GTP-bd_dom. IPR005225. Small_GTP-bd_dom. IPR009001. Transl_elong_EF1A/Init_IF2_C. IPR004161. Transl_elong_EFTu/EF1A_2. IPR004541. Transl_elong_EFTu/EF1A_bac/org. IPR004160. Transl_elong_EFTu/EF1A_C. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Pfam	PF00009. GTP_EFTU. 1 hit. PF03144. GTP_EFTU_D2. 1 hit. PF03143. GTP_EFTU_D3. 1 hit. [Graphical view]
PRINTS	PR00315. ELONGATNFCT.
SUPFAM	SSF50465. Elong_init_C. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR00485. EF-Tu. 1 hit. TIGR00231. small_GTP. 1 hit.
PROSITE	PS00301. EFACTOR_GTP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D3DHL1_HYDTT

Accession

Primary (citable) accession number: D3DHL1

Entry history

Integrated into UniProtKB/TrEMBL:	March 23, 2010
Last sequence update:	March 23, 2010
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Regions

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Family and domain databases

Entry information