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D2XNA6

- D2XNA6_YEASX

UniProt

D2XNA6 - D2XNA6_YEASX

Protein
Submitted name:

Retrotransposon TYA transposon protein

Gene

TYA gag

Organism
Saccharomyces cerevisiae (Baker's yeast)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 25 (01 Oct 2014)
      Sequence version 1 (02 Mar 2010)
      Previous versions | rss
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    Functioni

    Capsid protein (CA) is the structural component of the virus-like particle (VLP), forming the shell that encapsulates the retrotransposons dimeric RNA genome. The particles are assembled from trimer-clustered units and there are holes in the capsid shells that allow for the diffusion of macromolecules. CA has also nucleocapsid-like chaperone activity, promoting primer tRNA(i)-Met annealing to the multipartite primer-binding site (PBS), dimerization of Ty1 RNA and initiation of reverse transcription.SAAS annotation

    GO - Molecular functioni

    1. RNA binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Retrotransposon TYA transposon proteinImported
    Gene namesi
    Name:TYA gagImported
    Ordered Locus Names:YDR365W-AImported
    OrganismiSaccharomyces cerevisiae (Baker's yeast)Imported
    Taxonomic identifieri4932 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

    Organism-specific databases

    SGDiS000007400. YDR365W-A.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-KW

    Keywords - Cellular componenti

    CytoplasmSAAS annotation

    PTM / Processingi

    Proteomic databases

    PRIDEiD2XNA6.

    Structurei

    3D structure databases

    ProteinModelPortaliD2XNA6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    PhylomeDBiD2XNA6.

    Family and domain databases

    InterProiIPR015820. Retrotransposon_Ty1A_N.
    [Graphical view]
    PfamiPF01021. TYA. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D2XNA6-1 [UniParc]FASTAAdd to Basket

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    MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA    50
    NSQQTTTPAS SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG 100
    WSFYGHPSMI PYTPYQMSPM YFPPGPQSQF PQYPSSVGTP LSTPSPESGN 150
    TFTDSSSADS DMTSTKKYVR PPPMLTSPND FPNWVKTYIK FLQNSNLGGI 200
    IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI LSVDYTDIMK 250
    ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN 300
    GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ 350
    QGSRNSKPNY RRNLSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA 400
    HNVSTSNNSP STDNDSISKS TTEPIQLNNK HDLHLRPGTY 440
    Length:440
    Mass (Da):48,953
    Last modified:March 2, 2010 - v1
    Checksum:iB3C484A9901A8296
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GU220389 Genomic DNA. Translation: ADB23359.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GU220389 Genomic DNA. Translation: ADB23359.1 .

    3D structure databases

    ProteinModelPortali D2XNA6.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi D2XNA6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    SGDi S000007400. YDR365W-A.

    Phylogenomic databases

    PhylomeDBi D2XNA6.

    Family and domain databases

    InterProi IPR015820. Retrotransposon_Ty1A_N.
    [Graphical view ]
    Pfami PF01021. TYA. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Chromosome III RAHS Ty Cluster from S288C Background."
      Hoang M., Koshland D., Park S., Wan K.H., Hoskins R.A., Celniker S.E.
      Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: S288CImported.
    2. "Competitive repair by naturally dispersed repetitive DNA during non-allelic homologous recombination."
      Hoang M.L., Tan F.J., Lai D.C., Celniker S.E., Hoskins R.A., Dunham M.J., Zheng Y., Koshland D.
      PLoS Genet. 6:E1001228-E1001228(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: S288CImported.

    Entry informationi

    Entry nameiD2XNA6_YEASX
    AccessioniPrimary (citable) accession number: D2XNA6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 2, 2010
    Last sequence update: March 2, 2010
    Last modified: October 1, 2014
    This is version 25 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)