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D2XNA6

- D2XNA6_YEASX

UniProt

D2XNA6 - D2XNA6_YEASX

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Protein
Submitted name:

Retrotransposon TYA transposon protein

Gene

TYA gag

Organism
Saccharomyces cerevisiae (Baker's yeast)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

Capsid protein (CA) is the structural component of the virus-like particle (VLP), forming the shell that encapsulates the retrotransposons dimeric RNA genome. The particles are assembled from trimer-clustered units and there are holes in the capsid shells that allow for the diffusion of macromolecules. CA has also nucleocapsid-like chaperone activity, promoting primer tRNA(i)-Met annealing to the multipartite primer-binding site (PBS), dimerization of Ty1 RNA and initiation of reverse transcription.SAAS annotation

GO - Molecular functioni

  1. RNA binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Retrotransposon TYA transposon proteinImported
Gene namesi
Name:TYA gagImported
Ordered Locus Names:YDR365W-AImported
OrganismiSaccharomyces cerevisiae (Baker's yeast)Imported
Taxonomic identifieri4932 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Organism-specific databases

SGDiS000007400. YDR365W-A.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

PTM / Processingi

Proteomic databases

PRIDEiD2XNA6.

Structurei

3D structure databases

ProteinModelPortaliD2XNA6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

PhylomeDBiD2XNA6.

Family and domain databases

InterProiIPR015820. Retrotransposon_Ty1A_N.
[Graphical view]
PfamiPF01021. TYA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D2XNA6-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA
60 70 80 90 100
NSQQTTTPAS SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG
110 120 130 140 150
WSFYGHPSMI PYTPYQMSPM YFPPGPQSQF PQYPSSVGTP LSTPSPESGN
160 170 180 190 200
TFTDSSSADS DMTSTKKYVR PPPMLTSPND FPNWVKTYIK FLQNSNLGGI
210 220 230 240 250
IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI LSVDYTDIMK
260 270 280 290 300
ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN
310 320 330 340 350
GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ
360 370 380 390 400
QGSRNSKPNY RRNLSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA
410 420 430 440
HNVSTSNNSP STDNDSISKS TTEPIQLNNK HDLHLRPGTY
Length:440
Mass (Da):48,953
Last modified:March 2, 2010 - v1
Checksum:iB3C484A9901A8296
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GU220389 Genomic DNA. Translation: ADB23359.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GU220389 Genomic DNA. Translation: ADB23359.1 .

3D structure databases

ProteinModelPortali D2XNA6.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi D2XNA6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

SGDi S000007400. YDR365W-A.

Phylogenomic databases

PhylomeDBi D2XNA6.

Family and domain databases

InterProi IPR015820. Retrotransposon_Ty1A_N.
[Graphical view ]
Pfami PF01021. TYA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Chromosome III RAHS Ty Cluster from S288C Background."
    Hoang M., Koshland D., Park S., Wan K.H., Hoskins R.A., Celniker S.E.
    Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: S288CImported.
  2. "Competitive repair by naturally dispersed repetitive DNA during non-allelic homologous recombination."
    Hoang M.L., Tan F.J., Lai D.C., Celniker S.E., Hoskins R.A., Dunham M.J., Zheng Y., Koshland D.
    PLoS Genet. 6:E1001228-E1001228(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: S288CImported.

Entry informationi

Entry nameiD2XNA6_YEASX
AccessioniPrimary (citable) accession number: D2XNA6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: October 1, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)