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D2XNA6 (D2XNA6_YEASX) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:TYA gag EMBL ADB23359.1
OrganismSaccharomyces cerevisiae (Baker's yeast) EMBL ADB23359.1
Taxonomic identifier4932 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length440 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein (CA) is the structural component of the virus-like particle (VLP), forming the shell that encapsulates the retrotransposons dimeric RNA genome. The particles are assembled from trimer-clustered units and there are holes in the capsid shells that allow for the diffusion of macromolecules. CA has also nucleocapsid-like chaperone activity, promoting primer tRNA(i)-Met annealing to the multipartite primer-binding site (PBS), dimerization of Ty1 RNA and initiation of reverse transcription By similarity. SAAS SAAS015820

Ontologies

Keywords
   Cellular componentCytoplasm SAAS SAAS015820
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D2XNA6 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: B3C484A9901A8296

FASTA44048,953
        10         20         30         40         50         60 
MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS 

        70         80         90        100        110        120 
SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 

       130        140        150        160        170        180 
YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPND 

       190        200        210        220        230        240 
FPNWVKTYIK FLQNSNLGGI IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI 

       250        260        270        280        290        300 
LSVDYTDIMK ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN 

       310        320        330        340        350        360 
GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ QGSRNSKPNY 

       370        380        390        400        410        420 
RRNLSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA HNVSTSNNSP STDNDSISKS 

       430        440 
TTEPIQLNNK HDLHLRPGTY 

« Hide

References

[1]"Chromosome III RAHS Ty Cluster from S288C Background."
Hoang M., Koshland D., Park S., Wan K.H., Hoskins R.A., Celniker S.E.
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: S288C EMBL ADB23359.1.
[2]"Competitive repair by naturally dispersed repetitive DNA during non-allelic homologous recombination."
Hoang M.L., Tan F.J., Lai D.C., Celniker S.E., Hoskins R.A., Dunham M.J., Zheng Y., Koshland D.
PLoS Genet. 6:E1001228-E1001228(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: S288C EMBL ADB23359.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GU220389 Genomic DNA. Translation: ADB23359.1.

3D structure databases

ProteinModelPortalD2XNA6.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDED2XNA6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

PhylomeDBD2XNA6.

Family and domain databases

InterProIPR015820. Retrotransposon_Ty1A_N.
[Graphical view]
PfamPF01021. TYA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD2XNA6_YEASX
AccessionPrimary (citable) accession number: D2XNA6
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: November 13, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)