D2UBI0 (D2UBI0_XANAP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Peptidyl-tRNA hydrolase HAMAP-Rule MF_00083
Short name=PTH HAMAP-Rule MF_00083
EC=3.1.1.29 HAMAP-Rule MF_00083

Gene names

Name:	pth HAMAP-Rule MF_00083 EMBL CBA15027.1
Ordered Locus Names:	XALC_0494 EMBL CBA15027.1, XALc_0494

Organism

Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) [Complete proteome] [HAMAP] EMBL CBA15027.1

Taxonomic identifier

380358 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas › Xanthomonas albilineans

Protein attributes

Sequence length	194 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis By similarity. HAMAP-Rule MF_00083
Catalytic activity	N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA. HAMAP-Rule MF_00083 RuleBase RU000673
Subunit structure	Monomer By similarity. HAMAP-Rule MF_00083
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00083.
Sequence similarities	Belongs to the PTH family. HAMAP-Rule MF_00083 RuleBase RU004320

Ontologies

Keywords
Cellular component	Cytoplasm HAMAP-Rule MF_00083
Molecular function	Hydrolase HAMAP-Rule MF_00083 RuleBase RU000673 EMBL CBA15027.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	aminoacyl-tRNA hydrolase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2UBI0 [UniParc]. Last modified March 2, 2010. Version 1. Checksum: B93EB38211B9B86C	FASTA	194	21,097
	10 20 30 40 50 60 MTGLRLIVGL GNPGAEHANT RHNAGFRFVD HLLQQAGARW SVEAKLFGEI AKVDVAGQSV 70 80 90 100 110 120 WLLKPATYMN LSGKSVTAAL RYWKIEPAQA LLAHDDLDLA PGTVRLKFDG GHGGQNGLRD 130 140 150 160 170 180 TIRLLGHAGF HRLRIGIGHP GHKDKVVPWV LSRASQADQI LIDRAIDDAL AVLPLAVQGD 190 FNEAMKRLHT SRDS

References

[1]

"The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae." Pieretti I., Royer M., Barbe V., Carrere S., Koebnik R., Cociancich S., Couloux A., Darrasse A., Gouzy J., Jacques M.A., Lauber E., Manceau C., Mangenot S., Poussier S., Segurens B., Szurek B., Verdier V., Arlat M., Rott P. BMC Genomics 10:616-616(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: GPE PC73 / CFBP 7063.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FP565176 Genomic DNA. Translation: CBA15027.1.
RefSeq	YP_003375015.1. NC_013722.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8700657.
KEGG	xal:XALc_0494.
PATRIC	32543461. VBIXanAlb89132_0497.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000004796.
KO	K01056.
Family and domain databases
Gene3D	3.40.50.1470. 1 hit.
HAMAP	MF_00083. Pept_tRNA_hydro_bact.
InterPro	IPR001328. Pept_tRNA_hydro. IPR018171. Pept_tRNA_hydro_CS. [Graphical view]
PANTHER	PTHR17224. PTHR17224. 1 hit.
Pfam	PF01195. Pept_tRNA_hydro. 1 hit. [Graphical view]
SUPFAM	SSF53178. Pept_tRNA_hydro. 1 hit.
TIGRFAMs	TIGR00447. pth. 1 hit.
PROSITE	PS01195. PEPT_TRNA_HYDROL_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2UBI0_XANAP

Accession

Primary (citable) accession number: D2UBI0

Entry history

Integrated into UniProtKB/TrEMBL:	March 2, 2010
Last sequence update:	March 2, 2010
Last modified:	May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)