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D2TTS0

- D2TTS0_CITRI

UniProt

D2TTS0 - D2TTS0_CITRI

Protein

Pseudouridine synthase

Gene

rluC

Organism
Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (02 Mar 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. pseudouridine synthase activity Source: InterPro
    2. RNA binding Source: InterPro

    GO - Biological processi

    1. pseudouridine synthesis Source: InterPro

    Keywords - Molecular functioni

    IsomeraseUniRule annotationImported

    Enzyme and pathway databases

    BioCyciCROD637910:GJIG-1163-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
    Gene namesi
    Name:rluCImported
    Ordered Locus Names:ROD_11481Imported
    OrganismiCitrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)Imported
    Taxonomic identifieri637910 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeCitrobacter
    ProteomesiUP000001889: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase rluA family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000275914.
    KOiK06179.
    OMAiKKQVNAP.

    Family and domain databases

    Gene3Di3.10.290.10. 1 hit.
    InterProiIPR020103. PsdUridine_synth_cat_dom.
    IPR006225. PsdUridine_synth_RluC/D.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PfamiPF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
    PROSITEiPS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D2TTS0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKTETPSVKI VAITADEAGQ RIDNFLRTQL KGVPKSMIYR ILRKGEVRVN    50
    KKRIKPEYKL EAGDEIRIPP VRVAEREEEA VSPHLQKVAA LADVILYEDD 100
    HILVLNKPSG TAVHGGSGLS FGVIEGLRAL RPEARFLELV HRLDRDTSGV 150
    LLVAKKRSAL RSLHEQLREK GMQKDYLALV RGQWQSHVKN VQAPLLKNIL 200
    QSGERIVRVS QEGKPSETRF KVEERYAFAT LVRCSPVTGR THQIRVHTQY 250
    AGHPIAFDDR YGDREFDKQL AATGLSRLFL HAAALKFTHP GTGEVLRIEA 300
    PMDGQLKHCL QVLRKPG 317
    Length:317
    Mass (Da):35,670
    Last modified:March 2, 2010 - v1
    Checksum:i5D6A163A4B9B0194
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN543502 Genomic DNA. Translation: CBG87914.1.
    RefSeqiWP_012905435.1. NC_013716.1.
    YP_003364740.1. NC_013716.1.

    Genome annotation databases

    EnsemblBacteriaiCBG87914; CBG87914; ROD_11481.
    GeneIDi8714610.
    KEGGicro:ROD_11481.
    PATRICi32026188. VBICitRod33214_1124.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN543502 Genomic DNA. Translation: CBG87914.1 .
    RefSeqi WP_012905435.1. NC_013716.1.
    YP_003364740.1. NC_013716.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBG87914 ; CBG87914 ; ROD_11481 .
    GeneIDi 8714610.
    KEGGi cro:ROD_11481.
    PATRICi 32026188. VBICitRod33214_1124.

    Phylogenomic databases

    HOGENOMi HOG000275914.
    KOi K06179.
    OMAi KKQVNAP.

    Enzyme and pathway databases

    BioCyci CROD637910:GJIG-1163-MONOMER.

    Family and domain databases

    Gene3Di 3.10.290.10. 1 hit.
    InterProi IPR020103. PsdUridine_synth_cat_dom.
    IPR006225. PsdUridine_synth_RluC/D.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    Pfami PF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    TIGRFAMsi TIGR00005. rluA_subfam. 1 hit.
    PROSITEi PS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli."
      Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R.
      J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ICC168Imported.

    Entry informationi

    Entry nameiD2TTS0_CITRI
    AccessioniPrimary (citable) accession number: D2TTS0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 2, 2010
    Last sequence update: March 2, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3