D2TTS0 (D2TTS0_CITRI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Name:	rluC EMBL CBG87914.1
Ordered Locus Names:	ROD_11481 EMBL CBG87914.1

Organism

Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280) [Complete proteome] [HAMAP] EMBL CBG87914.1

Taxonomic identifier

637910 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Citrobacter › Citrobacter rodentium

Protein attributes

Sequence length	317 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886 EMBL CBG87914.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2TTS0 [UniParc]. Last modified March 2, 2010. Version 1. Checksum: 5D6A163A4B9B0194	FASTA	317	35,670
	10 20 30 40 50 60 MKTETPSVKI VAITADEAGQ RIDNFLRTQL KGVPKSMIYR ILRKGEVRVN KKRIKPEYKL 70 80 90 100 110 120 EAGDEIRIPP VRVAEREEEA VSPHLQKVAA LADVILYEDD HILVLNKPSG TAVHGGSGLS 130 140 150 160 170 180 FGVIEGLRAL RPEARFLELV HRLDRDTSGV LLVAKKRSAL RSLHEQLREK GMQKDYLALV 190 200 210 220 230 240 RGQWQSHVKN VQAPLLKNIL QSGERIVRVS QEGKPSETRF KVEERYAFAT LVRCSPVTGR 250 260 270 280 290 300 THQIRVHTQY AGHPIAFDDR YGDREFDKQL AATGLSRLFL HAAALKFTHP GTGEVLRIEA 310 PMDGQLKHCL QVLRKPG

References

[1]

"The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli." Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R. J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ICC168 EMBL CBG87914.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FN543502 Genomic DNA. Translation: CBG87914.1.
RefSeq	YP_003364740.1. NC_013716.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBG87914; CBG87914; ROD_11481.
GeneID	8714610.
KEGG	cro:ROD_11481.
PATRIC	32026188. VBICitRod33214_1124.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000275914.
KO	K06179.
OMA	HAANIKF.
Enzyme and pathway databases
BioCyc	CROD637910:GJIG-1163-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2TTS0_CITRI

Accession

Primary (citable) accession number: D2TTS0

Entry history

Integrated into UniProtKB/TrEMBL:	March 2, 2010
Last sequence update:	March 2, 2010
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)