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D2TTS0 (D2TTS0_CITRI) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length317 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
   Molecular functionIsomerase RuleBase RU003886 EMBL CBG87914.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D2TTS0 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: 5D6A163A4B9B0194

FASTA31735,670
        10         20         30         40         50         60 
MKTETPSVKI VAITADEAGQ RIDNFLRTQL KGVPKSMIYR ILRKGEVRVN KKRIKPEYKL 

        70         80         90        100        110        120 
EAGDEIRIPP VRVAEREEEA VSPHLQKVAA LADVILYEDD HILVLNKPSG TAVHGGSGLS 

       130        140        150        160        170        180 
FGVIEGLRAL RPEARFLELV HRLDRDTSGV LLVAKKRSAL RSLHEQLREK GMQKDYLALV 

       190        200        210        220        230        240 
RGQWQSHVKN VQAPLLKNIL QSGERIVRVS QEGKPSETRF KVEERYAFAT LVRCSPVTGR 

       250        260        270        280        290        300 
THQIRVHTQY AGHPIAFDDR YGDREFDKQL AATGLSRLFL HAAALKFTHP GTGEVLRIEA 

       310 
PMDGQLKHCL QVLRKPG 

« Hide

References

[1]"The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli."
Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R.
J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ICC168 EMBL CBG87914.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN543502 Genomic DNA. Translation: CBG87914.1.
RefSeqYP_003364740.1. NC_013716.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBG87914; CBG87914; ROD_11481.
GeneID8714610.
KEGGcro:ROD_11481.
PATRIC32026188. VBICitRod33214_1124.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000275914.
KOK06179.
OMAIVRVPPV.

Enzyme and pathway databases

BioCycCROD637910:GJIG-1163-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00005. rluA_subfam. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD2TTS0_CITRI
AccessionPrimary (citable) accession number: D2TTS0
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: October 16, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)