D2TMG4 (D2TMG4_CITRI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative polysaccharide degrading enzyme EMBL CBG91178.1

Gene names

Ordered Locus Names:

ROD_44831 EMBL CBG91178.1

Organism

Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280) [Complete proteome] [HAMAP] EMBL CBG91178.1

Taxonomic identifier

637910 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Citrobacter › Citrobacter rodentium

Protein attributes

Sequence length	628 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 18 family. RuleBase RU004453

Ontologies

Keywords
Domain	Signal EMBL CBG91178.1
Molecular function	Glycosidase RuleBase RU000489 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro chitin catabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	extracellular region Inferred from electronic annotation. Source: InterPro
Molecular_function	carbohydrate binding Inferred from electronic annotation. Source: InterPro chitinase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 23	23	Potential EMBL CBG91178.1
	Chain	24 – 628	605	Potential		PRO_5000565785

Sequences

	Sequence		Length	Mass (Da)
	D2TMG4 [UniParc]. Last modified March 2, 2010. Version 1. Checksum: 2A0B3C1D34E75BB7	FASTA	628	70,456
	10 20 30 40 50 60 MKLNKLTSVM FIAGMSFCFS SFAATLSMND DANTISGLNS SQMLSKNNGS TWEAWTDSSK 70 80 90 100 110 120 NNFPGAVTVM VAQKDNNAIN SVDYDPAATY GTAGTLVRYN GYYWQSQWWA DPGRIPGSDP 130 140 150 160 170 180 VWLKVGPIQI QNLATFTFTP YSGQKAADLQ KEAKDKVAAQ RKVIGYFPEW GVYEAHNYFT 190 200 210 220 230 240 PDKIDFSQLT HLNYGFAVIK GGEVVIHDTY KGPELLRQLD KLTEQNGVTN MVSVGGWNNS 250 260 270 280 290 300 EEGVFEEATR TQEGINKLAD SMIAFMQEWG FDGIDIDWEY PDSDAERANF TSLVQTLRSK 310 320 330 340 350 360 LDALGLQSDK YFQLSAAVTT NHNNIQYINP EVTAPLLDSV NVMAYDIHGA FDSITGHNAP 370 380 390 400 410 420 LYANSKDADQ KLNVASTLQE YSTTWNVPKS KLMVGIPYYG RGWGNVAPTE IVKGLPGLFA 430 440 450 460 470 480 SGSATVHGAW DDEGQFTGTN PYYLLKEYAA SADWTRYWDS ESQVPYLYNA KTKEFLTYDD 490 500 510 520 530 540 PESVQKKVNF INQNGYGGAI VWDLSGDTPE HELGEIVDDV FEKMITDGVI SFEPYTGPTE 550 560 570 580 590 600 RNMRLTLSKE AFKTRKFVAY HNGKYMGHTE RNLSYYGKHW SVDNGLNEEI KLQYYYKPQA 610 620 GDVIKLVEDN WIKETELKTI ILTEDMLK

References

[1]

"The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli." Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R. J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ICC168 EMBL CBG91178.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FN543502 Genomic DNA. Translation: CBG91178.1.
RefSeq	YP_003367890.1. NC_013716.1.
3D structure databases
ProteinModelPortal	D2TMG4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBG91178; CBG91178; ROD_44831.
GeneID	8712254.
KEGG	cro:ROD_44831.
PATRIC	32032618. VBICitRod33214_4264.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000159485.
KO	K01183.
Enzyme and pathway databases
BioCyc	CROD637910:GJIG-4527-MONOMER.
Family and domain databases
Gene3D	2.10.10.20. 1 hit. 3.20.20.80. 2 hits.
InterPro	IPR003610. CBM_fam5/12. IPR011583. Chitinase_II. IPR001223. Glyco_hydro18cat. IPR001579. Glyco_hydro_18_chit_AS. IPR013781. Glyco_hydro_catalytic_dom. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Pfam	PF00704. Glyco_hydro_18. 1 hit. [Graphical view]
SMART	SM00636. Glyco_18. 1 hit. [Graphical view]
SUPFAM	SSF51055. CBM_5_12. 1 hit. SSF51445. Glyco_hydro_cat. 1 hit.
PROSITE	PS01095. CHITINASE_18. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2TMG4_CITRI

Accession

Primary (citable) accession number: D2TMG4

Entry history

Integrated into UniProtKB/TrEMBL:	March 2, 2010
Last sequence update:	March 2, 2010
Last modified:	May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)