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Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciCROD637910:GJIG-4282-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Name:malSImported
Ordered Locus Names:ROD_42381Imported
OrganismiCitrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)Imported
Taxonomic identifieri637910 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeCitrobacter
ProteomesiUP000001889 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919 PotentialImportedAdd
BLAST
Chaini20 – 676657 PotentialImportedPRO_5000565626Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi637910.ROD_42381.

Structurei

3D structure databases

ProteinModelPortaliD2TJT7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

HOGENOMiHOG000273912.
KOiK01176.
OMAiGQNWHSF.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

D2TJT7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLAAVTLAL LPAMGIASSW TSQGFPPFTA GGTGKFVSQT ALTKGTRPLL
60 70 80 90 100
LNFDQQCWQP ADAVKLNQML SLKPCEGAPP QWRLFKDGSY TLEIDTRSGT
110 120 130 140 150
PTLMITIQNE AEPAARVIRQ CPKWDGSPLT LEVAQTFPEG AVVRDFYSQQ
160 170 180 190 200
TATVKEGRIT LQPAPDSNGL LLLERAETNA PAPFDWHNAT VYFVLTDRFV
210 220 230 240 250
NGDPTNDHSY GRHKDGMEEI GTFHGGDLRG LTSKLDYLQQ LGVNALWISA
260 270 280 290 300
PFEQIHGWVG GGAKGDFPHY AYHGYYTQDW TRLDANMGNE EDLRALVDGA
310 320 330 340 350
HQRGIRVLFD VVMNHTGYAT LADMQEFNFG ALYLTGDELK KTLGERWTDW
360 370 380 390 400
KPGAGQNWHS FNDYINFSDK AAWEKWWGKA WIRTDIGDYD SPGFDDLTMS
410 420 430 440 450
LAFLPDLKTE STVPSGLPVF YQNKADTRAK AIDGYTPRDY LTHWLSQWVR
460 470 480 490 500
DYGIDGFRVD TAKHVELPAW QQLKTQASAA LVEWKKANPD KAPDDKPFWM
510 520 530 540 550
TGEAWGHGVM QSDYYRHGFD AMINFDYQEQ AAKAVDCLAN IDPVWQQMAE
560 570 580 590 600
KLQNFNVLSY LSSHDTRLFR EGNDNAAELL LLAPGAVQIF YGDESARPFG
610 620 630 640 650
PTGSDPLQGT RSDMNWQDIS GKFAGNVAHW QRLGQFRARH PAIGAGKQTT
660 670
LTLSQGYGFV RTTGDDSVMV VWAGQR
Length:676
Mass (Da):75,544
Last modified:March 2, 2010 - v1
Checksum:i0EA768D7131C69C4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN543502 Genomic DNA. Translation: CBG90935.1.
RefSeqiWP_012908178.1. NC_013716.1.

Genome annotation databases

EnsemblBacteriaiCBG90935; CBG90935; ROD_42381.
KEGGicro:ROD_42381.
PATRICi32032124. VBICitRod33214_4017.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN543502 Genomic DNA. Translation: CBG90935.1.
RefSeqiWP_012908178.1. NC_013716.1.

3D structure databases

ProteinModelPortaliD2TJT7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi637910.ROD_42381.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBG90935; CBG90935; ROD_42381.
KEGGicro:ROD_42381.
PATRICi32032124. VBICitRod33214_4017.

Phylogenomic databases

HOGENOMiHOG000273912.
KOiK01176.
OMAiGQNWHSF.

Enzyme and pathway databases

BioCyciCROD637910:GJIG-4282-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli."
    Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R.
    J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ICC168Imported.

Entry informationi

Entry nameiD2TJT7_CITRI
AccessioniPrimary (citable) accession number: D2TJT7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: July 22, 2015
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.