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D2TJT7

- D2TJT7_CITRI

UniProt

D2TJT7 - D2TJT7_CITRI

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Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. alpha-glucan catabolic process Source: InterPro
  2. cellular oligosaccharide catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciCROD637910:GJIG-4282-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Name:malSImported
Ordered Locus Names:ROD_42381Imported
OrganismiCitrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)Imported
Taxonomic identifieri637910 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeCitrobacter
ProteomesiUP000001889: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919 PotentialImportedAdd
BLAST
Chaini20 – 676657 PotentialImportedPRO_5000565626Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliD2TJT7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

HOGENOMiHOG000273912.
KOiK01176.
OMAiGQNWHSF.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

D2TJT7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLAAVTLAL LPAMGIASSW TSQGFPPFTA GGTGKFVSQT ALTKGTRPLL
60 70 80 90 100
LNFDQQCWQP ADAVKLNQML SLKPCEGAPP QWRLFKDGSY TLEIDTRSGT
110 120 130 140 150
PTLMITIQNE AEPAARVIRQ CPKWDGSPLT LEVAQTFPEG AVVRDFYSQQ
160 170 180 190 200
TATVKEGRIT LQPAPDSNGL LLLERAETNA PAPFDWHNAT VYFVLTDRFV
210 220 230 240 250
NGDPTNDHSY GRHKDGMEEI GTFHGGDLRG LTSKLDYLQQ LGVNALWISA
260 270 280 290 300
PFEQIHGWVG GGAKGDFPHY AYHGYYTQDW TRLDANMGNE EDLRALVDGA
310 320 330 340 350
HQRGIRVLFD VVMNHTGYAT LADMQEFNFG ALYLTGDELK KTLGERWTDW
360 370 380 390 400
KPGAGQNWHS FNDYINFSDK AAWEKWWGKA WIRTDIGDYD SPGFDDLTMS
410 420 430 440 450
LAFLPDLKTE STVPSGLPVF YQNKADTRAK AIDGYTPRDY LTHWLSQWVR
460 470 480 490 500
DYGIDGFRVD TAKHVELPAW QQLKTQASAA LVEWKKANPD KAPDDKPFWM
510 520 530 540 550
TGEAWGHGVM QSDYYRHGFD AMINFDYQEQ AAKAVDCLAN IDPVWQQMAE
560 570 580 590 600
KLQNFNVLSY LSSHDTRLFR EGNDNAAELL LLAPGAVQIF YGDESARPFG
610 620 630 640 650
PTGSDPLQGT RSDMNWQDIS GKFAGNVAHW QRLGQFRARH PAIGAGKQTT
660 670
LTLSQGYGFV RTTGDDSVMV VWAGQR
Length:676
Mass (Da):75,544
Last modified:March 2, 2010 - v1
Checksum:i0EA768D7131C69C4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN543502 Genomic DNA. Translation: CBG90935.1.
RefSeqiYP_003367652.1. NC_013716.1.

Genome annotation databases

EnsemblBacteriaiCBG90935; CBG90935; ROD_42381.
GeneIDi8712824.
KEGGicro:ROD_42381.
PATRICi32032124. VBICitRod33214_4017.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN543502 Genomic DNA. Translation: CBG90935.1 .
RefSeqi YP_003367652.1. NC_013716.1.

3D structure databases

ProteinModelPortali D2TJT7.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBG90935 ; CBG90935 ; ROD_42381 .
GeneIDi 8712824.
KEGGi cro:ROD_42381.
PATRICi 32032124. VBICitRod33214_4017.

Phylogenomic databases

HOGENOMi HOG000273912.
KOi K01176.
OMAi GQNWHSF.

Enzyme and pathway databases

BioCyci CROD637910:GJIG-4282-MONOMER.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
SMARTi SM00642. Aamy. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 2 hits.
ProtoNeti Search...

Publicationsi

  1. "The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli."
    Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R.
    J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ICC168Imported.

Entry informationi

Entry nameiD2TJT7_CITRI
AccessioniPrimary (citable) accession number: D2TJT7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: October 29, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3