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D2TJT7

- D2TJT7_CITRI

UniProt

D2TJT7 - D2TJT7_CITRI

Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (02 Mar 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Keywords - Molecular functioni

    GlycosidaseImported, Hydrolase

    Enzyme and pathway databases

    BioCyciCROD637910:GJIG-4282-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha-amylaseImported (EC:3.2.1.1Imported)
    Gene namesi
    Name:malSImported
    Ordered Locus Names:ROD_42381Imported
    OrganismiCitrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)Imported
    Taxonomic identifieri637910 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeCitrobacter
    ProteomesiUP000001889: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 1919 PotentialImportedAdd
    BLAST
    Chaini20 – 676657 PotentialImportedPRO_5000565626Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliD2TJT7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    HOGENOMiHOG000273912.
    KOiK01176.
    OMAiGQNWHSF.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    D2TJT7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLAAVTLAL LPAMGIASSW TSQGFPPFTA GGTGKFVSQT ALTKGTRPLL    50
    LNFDQQCWQP ADAVKLNQML SLKPCEGAPP QWRLFKDGSY TLEIDTRSGT 100
    PTLMITIQNE AEPAARVIRQ CPKWDGSPLT LEVAQTFPEG AVVRDFYSQQ 150
    TATVKEGRIT LQPAPDSNGL LLLERAETNA PAPFDWHNAT VYFVLTDRFV 200
    NGDPTNDHSY GRHKDGMEEI GTFHGGDLRG LTSKLDYLQQ LGVNALWISA 250
    PFEQIHGWVG GGAKGDFPHY AYHGYYTQDW TRLDANMGNE EDLRALVDGA 300
    HQRGIRVLFD VVMNHTGYAT LADMQEFNFG ALYLTGDELK KTLGERWTDW 350
    KPGAGQNWHS FNDYINFSDK AAWEKWWGKA WIRTDIGDYD SPGFDDLTMS 400
    LAFLPDLKTE STVPSGLPVF YQNKADTRAK AIDGYTPRDY LTHWLSQWVR 450
    DYGIDGFRVD TAKHVELPAW QQLKTQASAA LVEWKKANPD KAPDDKPFWM 500
    TGEAWGHGVM QSDYYRHGFD AMINFDYQEQ AAKAVDCLAN IDPVWQQMAE 550
    KLQNFNVLSY LSSHDTRLFR EGNDNAAELL LLAPGAVQIF YGDESARPFG 600
    PTGSDPLQGT RSDMNWQDIS GKFAGNVAHW QRLGQFRARH PAIGAGKQTT 650
    LTLSQGYGFV RTTGDDSVMV VWAGQR 676
    Length:676
    Mass (Da):75,544
    Last modified:March 2, 2010 - v1
    Checksum:i0EA768D7131C69C4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN543502 Genomic DNA. Translation: CBG90935.1.
    RefSeqiWP_012908178.1. NC_013716.1.
    YP_003367652.1. NC_013716.1.

    Genome annotation databases

    EnsemblBacteriaiCBG90935; CBG90935; ROD_42381.
    GeneIDi8712824.
    KEGGicro:ROD_42381.
    PATRICi32032124. VBICitRod33214_4017.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN543502 Genomic DNA. Translation: CBG90935.1 .
    RefSeqi WP_012908178.1. NC_013716.1.
    YP_003367652.1. NC_013716.1.

    3D structure databases

    ProteinModelPortali D2TJT7.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBG90935 ; CBG90935 ; ROD_42381 .
    GeneIDi 8712824.
    KEGGi cro:ROD_42381.
    PATRICi 32032124. VBICitRod33214_4017.

    Phylogenomic databases

    HOGENOMi HOG000273912.
    KOi K01176.
    OMAi GQNWHSF.

    Enzyme and pathway databases

    BioCyci CROD637910:GJIG-4282-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli."
      Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R.
      J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ICC168Imported.

    Entry informationi

    Entry nameiD2TJT7_CITRI
    AccessioniPrimary (citable) accession number: D2TJT7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 2, 2010
    Last sequence update: March 2, 2010
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3