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Protein
Submitted name:

SdaB protein

Gene

sdaB

Organism
Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. 4 iron, 4 sulfur cluster binding Source: InterPro
  2. L-serine ammonia-lyase activity Source: UniProtKB-EC

GO - Biological processi

  1. gluconeogenesis Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciCROD637910:GJIG-2875-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
SdaB proteinImported (EC:4.3.1.17Imported)
Gene namesi
Name:sdaBImported
Ordered Locus Names:ROD_28371Imported
OrganismiCitrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)Imported
Taxonomic identifieri637910 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeCitrobacter
ProteomesiUP000001889 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036732.
KOiK01752.
OMAiLENELTW.

Family and domain databases

Gene3Di3.30.1330.90. 1 hit.
InterProiIPR029009. ASB_dom.
IPR004644. Fe-S_L-Ser_mono.
IPR005130. Ser_deHydtase-like_asu.
IPR005131. Ser_deHydtase_bsu.
[Graphical view]
PfamiPF03313. SDH_alpha. 1 hit.
PF03315. SDH_beta. 1 hit.
[Graphical view]
SUPFAMiSSF143548. SSF143548. 1 hit.
TIGRFAMsiTIGR00720. sda_mono. 1 hit.

Sequencei

Sequence statusi: Complete.

D2TIL6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MISVFDIFKI GIGPSSSHTV GPMKAGKQFT DDLIARHLLT DVTRVVVDVY
60 70 80 90 100
GSLSLTGKGH HTDIAIIMGL AGNLPDTVDI DAIPSFIQDV NTHGRLLLAN
110 120 130 140 150
GQHEVEFPVD KCMNFHADNL SLHENGMRIT ALAGETVLYS QTYYSIGGGF
160 170 180 190 200
IVDEEHFGLP NSAPVNVPYP YKSAADLQRH CQETGLSLSG LMMQNELALH
210 220 230 240 250
SKEELEQHFA SVWEVMRSGI ERGISTEGVL PGKLRVPRRA AALRRMLVSQ
260 270 280 290 300
DKTTTDPMAV VDWINMFALA VNEENAAGGR VVTAPTNGAC GIVPAVLAYY
310 320 330 340 350
DKFIREVNAN SLARYMLVAS AIGSLYKMNA SISGAEVGCQ GEVGVACSMA
360 370 380 390 400
AAGLAELLGG SPAQVCIAAE IGMEHNLGLT CDPVAGQVQV PCIERNAIAS
410 420 430 440 450
VKAVNAARMA LRRTSEPRVC LDKVIETMYE TGKDMNAKYR ETSRGGLAMK

IVACD
Length:455
Mass (Da):48,752
Last modified:March 2, 2010 - v1
Checksum:i852A7411D62FEC90
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN543502 Genomic DNA. Translation: CBG89578.1.
RefSeqiYP_003366361.1. NC_013716.1.

Genome annotation databases

EnsemblBacteriaiCBG89578; CBG89578; ROD_28371.
KEGGicro:ROD_28371.
PATRICi32029467. VBICitRod33214_2734.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN543502 Genomic DNA. Translation: CBG89578.1.
RefSeqiYP_003366361.1. NC_013716.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBG89578; CBG89578; ROD_28371.
KEGGicro:ROD_28371.
PATRICi32029467. VBICitRod33214_2734.

Phylogenomic databases

HOGENOMiHOG000036732.
KOiK01752.
OMAiLENELTW.

Enzyme and pathway databases

BioCyciCROD637910:GJIG-2875-MONOMER.

Family and domain databases

Gene3Di3.30.1330.90. 1 hit.
InterProiIPR029009. ASB_dom.
IPR004644. Fe-S_L-Ser_mono.
IPR005130. Ser_deHydtase-like_asu.
IPR005131. Ser_deHydtase_bsu.
[Graphical view]
PfamiPF03313. SDH_alpha. 1 hit.
PF03315. SDH_beta. 1 hit.
[Graphical view]
SUPFAMiSSF143548. SSF143548. 1 hit.
TIGRFAMsiTIGR00720. sda_mono. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli."
    Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R.
    J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ICC168Imported.

Entry informationi

Entry nameiD2TIL6_CITRI
AccessioniPrimary (citable) accession number: D2TIL6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: April 29, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.