SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

D2THJ1

- D2THJ1_CITRI

UniProt

D2THJ1 - D2THJ1_CITRI

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Superoxide dismutase [Cu-Zn]

Gene
sodC, ROD_14221
Organism
Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Binds 1 copper ion per subunit By similarity.UniRule annotation
Binds 1 zinc ion per subunit By similarity.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Enzyme and pathway databases

BioCyciCROD637910:GJIG-1440-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:ROD_14221Imported
OrganismiCitrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)Imported
Taxonomic identifieri637910 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeCitrobacter
ProteomesiUP000001889: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919 PredictedImportedAdd
BLAST
Chaini20 – 173154 PredictedImportedPRO_5000565473Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliD2THJ1.

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Keywords - Domaini

SignalImported

Phylogenomic databases

HOGENOMiHOG000263449.
KOiK04565.
OMAiDHPKPLG.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

D2THJ1-1 [UniParc]FASTAAdd to Basket

« Hide

MKRLSLAVLT LLACTGAQAA SEKVEMNLVT AQGIGQSIGE VTINETEKGL    50
EFTPDLKALP PGEHGFHLHA NGSCEPAMKD GKASAAEAAG GHYDPHKTGK 100
HAGPDGDGHL GDLPVLVVNN EGKAVTPVTA SRLKSLDEIK DKALMIHVGG 150
DNMSDQPKPL GGGGARFACG VIK 173
Length:173
Mass (Da):17,778
Last modified:March 2, 2010 - v1
Checksum:i9A5AFE2F21AB2700
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN543502 Genomic DNA. Translation: CBG88185.1.
RefSeqiWP_012905683.1. NC_013716.1.
YP_003365005.1. NC_013716.1.

Genome annotation databases

EnsemblBacteriaiCBG88185; CBG88185; ROD_14221.
GeneIDi8710785.
KEGGicro:ROD_14221.
PATRICi32026731. VBICitRod33214_1391.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN543502 Genomic DNA. Translation: CBG88185.1 .
RefSeqi WP_012905683.1. NC_013716.1.
YP_003365005.1. NC_013716.1.

3D structure databases

ProteinModelPortali D2THJ1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBG88185 ; CBG88185 ; ROD_14221 .
GeneIDi 8710785.
KEGGi cro:ROD_14221.
PATRICi 32026731. VBICitRod33214_1391.

Phylogenomic databases

HOGENOMi HOG000263449.
KOi K04565.
OMAi DHPKPLG.

Enzyme and pathway databases

BioCyci CROD637910:GJIG-1440-MONOMER.

Family and domain databases

Gene3Di 2.60.40.200. 1 hit.
InterProi IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view ]
Pfami PF00080. Sod_Cu. 1 hit.
[Graphical view ]
SUPFAMi SSF49329. SSF49329. 1 hit.
PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli."
    Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R.
    J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ICC168Imported.

Entry informationi

Entry nameiD2THJ1_CITRI
AccessioniPrimary (citable) accession number: D2THJ1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: September 3, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi