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D2THJ1

- D2THJ1_CITRI

UniProt

D2THJ1 - D2THJ1_CITRI

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Protein
Superoxide dismutase [Cu-Zn]
Gene
sodC, ROD_14221
Organism
Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Binds 1 copper ion per subunit By similarity.UniRule annotation
Binds 1 zinc ion per subunit By similarity.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

    Complete GO annotation...

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Keywords - Ligandi

    CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

    Enzyme and pathway databases

    BioCyciCROD637910:GJIG-1440-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodCImported
    Ordered Locus Names:ROD_14221Imported
    OrganismiCitrobacter rodentium (strain ICC168) (Citrobacter freundii biotype 4280)Imported
    Taxonomic identifieri637910 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeCitrobacter
    ProteomesiUP000001889: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 1919 PredictedImported
    Add
    BLAST
    Chaini20 – 173154 PredictedImported
    PRO_5000565473Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliD2THJ1.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    HOGENOMiHOG000263449.
    KOiK04565.
    OMAiDHPKPLG.

    Family and domain databases

    Gene3Di2.60.40.200. 1 hit.
    InterProiIPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view]
    PfamiPF00080. Sod_Cu. 1 hit.
    [Graphical view]
    SUPFAMiSSF49329. SSF49329. 1 hit.
    PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    D2THJ1-1 [UniParc]FASTAAdd to Basket

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    MKRLSLAVLT LLACTGAQAA SEKVEMNLVT AQGIGQSIGE VTINETEKGL    50
    EFTPDLKALP PGEHGFHLHA NGSCEPAMKD GKASAAEAAG GHYDPHKTGK 100
    HAGPDGDGHL GDLPVLVVNN EGKAVTPVTA SRLKSLDEIK DKALMIHVGG 150
    DNMSDQPKPL GGGGARFACG VIK 173
    Length:173
    Mass (Da):17,778
    Last modified:March 2, 2010 - v1
    Checksum:i9A5AFE2F21AB2700
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN543502 Genomic DNA. Translation: CBG88185.1.
    RefSeqiWP_012905683.1. NC_013716.1.
    YP_003365005.1. NC_013716.1.

    Genome annotation databases

    EnsemblBacteriaiCBG88185; CBG88185; ROD_14221.
    GeneIDi8710785.
    KEGGicro:ROD_14221.
    PATRICi32026731. VBICitRod33214_1391.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN543502 Genomic DNA. Translation: CBG88185.1 .
    RefSeqi WP_012905683.1. NC_013716.1.
    YP_003365005.1. NC_013716.1.

    3D structure databases

    ProteinModelPortali D2THJ1.
    ModBasei Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBG88185 ; CBG88185 ; ROD_14221 .
    GeneIDi 8710785.
    KEGGi cro:ROD_14221.
    PATRICi 32026731. VBICitRod33214_1391.

    Phylogenomic databases

    HOGENOMi HOG000263449.
    KOi K04565.
    OMAi DHPKPLG.

    Enzyme and pathway databases

    BioCyci CROD637910:GJIG-1440-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.200. 1 hit.
    InterProi IPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view ]
    Pfami PF00080. Sod_Cu. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49329. SSF49329. 1 hit.
    PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli."
      Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., Parkhill J., Dougan G., Frankel G., Thomson N.R.
      J. Bacteriol. 192:525-538(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ICC168Imported.

    Entry informationi

    Entry nameiD2THJ1_CITRI
    AccessioniPrimary (citable) accession number: D2THJ1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 2, 2010
    Last sequence update: March 2, 2010
    Last modified: September 3, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    External Data

    Dasty 3

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