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D2SHH1 (D2SHH1_GEOOG) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Glutamate-1-semialdehyde 2,1-aminomutase HAMAP-Rule MF_00375
Short name=GSA HAMAP-Rule MF_00375
EC=5.4.3.8 HAMAP-Rule MF_00375
Alternative name(s):
Glutamate-1-semialdehyde aminotransferase HAMAP-Rule MF_00375
Gene names
Name:hemL HAMAP-Rule MF_00375
Ordered Locus Names:Gobs_4575 EMBL ADB77125.1
OrganismGeodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) [Complete proteome] [HAMAP] EMBL ADB77125.1
Taxonomic identifier526225 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Geodermatophilaceae › Geodermatophilus ›

Protein attributes

Sequence length461 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

(S)-4-amino-5-oxopentanoate = 5-aminolevulinate. HAMAP-Rule MF_00375 SAAS SAAS004639

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_00375 SAAS SAAS004639

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00375

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00375 SAAS SAAS004639.

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily. HAMAP-Rule MF_00375

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Amino acid modifications

Modified residue2771N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_00375

Sequences

Sequence LengthMass (Da)Tools
D2SHH1 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: B88B0C9D140EE8BD

FASTA46147,831
        10         20         30         40         50         60 
MTSLDSRPYT YEAPASADLF ARAQRVTPGG VNSPVRAFGA VGGTPRFMAQ GQGAYLTDAD 

        70         80         90        100        110        120 
GRRYVDLVAS WGPLILGHAH PAVVEAVTAA ARRGLTFGTP TEGEVELAEE ILRRMPPVEE 

       130        140        150        160        170        180 
VRLVNSGTEA VLSAVRLARG VTGRRLVVKF AGCYHGHVDA LLASAGSGVA TLGLPDTPGV 

       190        200        210        220        230        240 
TTGAAADTVV LPYNDAAAVE AVFAERGSEI AAVITEAAVG NMGVVPPLDG FNQALRRTTA 

       250        260        270        280        290        300 
AHGALLIVDE VMTGFRVSRS GWYGLDPVDA DLMTFGKVMG GGLPAAAFGG RADLMEHLAP 

       310        320        330        340        350        360 
VGPVYQAGTL SGNPVAVAAG LATLRHCTDE VYARCDEVAV TLRGAASAAL FAAGVPHRVQ 

       370        380        390        400        410        420 
QAGSMFSVFF VPDERQVRNY DDARSQDAAR YTAFFHAMLA RGVYLPPSAF ESWFVSAALD 

       430        440        450        460 
DQAVERVLDA LPAAARAAAA VEPATAPPAE EPADARSGMS T

« Hide

References

[1]"The complete genome of Geodermatophilus obscurus DSM 43160."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Munk A.C., Brettin T., Detter J.C., Han C., Larimer F., Land M. expand/collapse author list , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Schneider S., Klenk H.-P., Eisen J.A.
Submitted (JAN-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25078 / DSM 43160 / JCM 3152 / G-20.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001867 Genomic DNA. Translation: ADB77125.1.
RefSeqYP_003411496.1. NC_013757.1.

3D structure databases

ProteinModelPortalD2SHH1.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB77125; ADB77125; Gobs_4575.
GeneID8756273.
KEGGgob:Gobs_4575.
PATRIC32178353. VBIGeoObs49253_4566.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000020210.
KOK01845.
OMAFNGNPIS.

Enzyme and pathway databases

BioCycGOBS526225:GI00-4631-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
HAMAPMF_00375. HemL_aminotrans_3.
InterProIPR004639. 4pyrrol_synth_GluAld_NH2Trfase.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PTHR11986:SF5. PTHR11986:SF5. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR00713. hemL. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD2SHH1_GEOOG
AccessionPrimary (citable) accession number: D2SHH1
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: May 29, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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