D2SG25 (D2SG25_GEOOG) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
dTDP-glucose 4,6-dehydratase RuleBase RU004473
EC=4.2.1.46 RuleBase RU004473

Gene names

Ordered Locus Names:

Gobs_4331

Organism

Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) [Complete proteome] [HAMAP]

Taxonomic identifier

526225 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Geodermatophilaceae › Geodermatophilus › Geodermatophilus obscurus

Protein attributes

Sequence length	331 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	dTDP-alpha-D-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H2O. RuleBase RU004473
Cofactor	NAD By similarity. RuleBase RU004473
Sequence similarities	Belongs to the sugar epimerase family. dTDP-glucose dehydratase subfamily. RuleBase RU004473

Ontologies

Keywords
Molecular function	Lyase RuleBase RU004473
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	nucleotide-sugar metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	coenzyme binding Inferred from electronic annotation. Source: InterPro dTDP-glucose 4,6-dehydratase activity Inferred from electronic annotation. Source: EC nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2SG25 [UniParc]. Last modified March 2, 2010. Version 1. Checksum: BBC8F4796718571D	FASTA	331	36,261
	10 20 30 40 50 60 MRVLVTGGAG FIGSHYVRTL LTGGYPGFED AEVTVFDKLT YAGNLANLVP VADSPRYRFV 70 80 90 100 110 120 QGDICSAADL DAALPGHDVV VNFAAESHVD RSITGASEFV LTNVLGAQQV FEACLRHGVR 130 140 150 160 170 180 RVVHVSTDEV YGSIDEGSWT EDHLLEPNSP YSAAKAGGDL VARAYAKTYG LDISITRCSN 190 200 210 220 230 240 NYGPYHFPEK VIPLFVTNLL DGHKVPLYGE GANVRDWLFV DDHCRGIQLV LEQGRPGEFY 250 260 270 280 290 300 NIGGGRELSN RELTEKLLEA TGRDWSYVEN IVDPRGGGHD LRYSVDFSKT AALGYAPRTG 310 320 330 FEDGLALTVQ WYRDNRAWWE PLKVAAATAR A

References

[1]

"The complete genome of Geodermatophilus obscurus DSM 43160." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Munk A.C., Brettin T., Detter J.C., Han C., Larimer F., Land M. , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Schneider S., Klenk H.-P., Eisen J.A. Submitted (JAN-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25078 / DSM 43160 / JCM 3152 / G-20.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001867 Genomic DNA. Translation: ADB76893.1.
RefSeq	YP_003411264.1. NC_013757.1.
3D structure databases
ProteinModelPortal	D2SG25.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADB76893; ADB76893; Gobs_4331.
GeneID	8756025.
KEGG	gob:Gobs_4331.
PATRIC	32177841. VBIGeoObs49253_4314.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000168006.
KO	K01710.
OMA	ISITRCS.
Enzyme and pathway databases
BioCyc	GOBS526225:GI00-4382-MONOMER.
Family and domain databases
Gene3D	3.40.50.720. 1 hit.
InterPro	IPR005888. dTDP_Gluc_deHydtase. IPR001509. Epimerase_deHydtase. IPR016040. NAD(P)-bd_dom. [Graphical view]
PANTHER	PTHR10366:SF41. PTHR10366:SF41. 1 hit.
Pfam	PF01370. Epimerase. 1 hit. [Graphical view]
TIGRFAMs	TIGR01181. dTDP_gluc_dehyt. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D2SG25_GEOOG

Accession

Primary (citable) accession number: D2SG25

Entry history

Integrated into UniProtKB/TrEMBL:	March 2, 2010
Last sequence update:	March 2, 2010
Last modified:	May 1, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)