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D2SFQ0 (D2SFQ0_GEOOG) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Gobs_2120 EMBL ADB74805.1
OrganismGeodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) [Complete proteome] [HAMAP] EMBL ADB74805.1
Taxonomic identifier526225 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeGeodermatophilaceaeGeodermatophilus

Protein attributes

Sequence length436 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADB74805.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D2SFQ0 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: 16FC31108F163438

FASTA43646,914
        10         20         30         40         50         60 
MPTRGSARRP TPPAGEPFVV TEHPSSGAEL RLERNGVPCC WDLPEGPPAA RGRALPAVPT 

        70         80         90        100        110        120 
MGGDGGGLPT WDAGRYAVEQ WTDDRVVVVL AGRRLRGRHV LFRSPDGGWS VRALDAPAEG 

       130        140        150        160        170        180 
APLVPMLATA GELPPSAQDH DWGYEFKWDG VRALAVVEAG GLALWARSGT DITVRYPELS 

       190        200        210        220        230        240 
LPTALTGHDA VVDGEVVALD ARGRPDFGAL QGRMHRTGPE VRRMAATTPV TYLVFDLLAW 

       250        260        270        280        290        300 
EGESLLALPY AQRRERLEAL GVAGERWVPT PWFRGGGAAV LAASRDNGLE GIVAKRLDSP 

       310        320        330        340        350        360 
YRPGLRGPDW RKVKNVRTQA VVVGGWRPGQ GRRAGGVGSL LVGVHDDAGR LVYAGHVGTG 

       370        380        390        400        410        420 
FTAAALAELQ PLFTPAHRPP FADALPREVT RDARWVAPEL VGEVAFAAWT ADGRMRHPSW 

       430 
RGLRDDLAPE DVVEEW 

« Hide

References

[1]"The complete genome of Geodermatophilus obscurus DSM 43160."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Munk A.C., Brettin T., Detter J.C., Han C., Larimer F., Land M. expand/collapse author list , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Schneider S., Klenk H.-P., Eisen J.A.
Submitted (JAN-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25078 / DSM 43160 / JCM 3152 / G-20.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001867 Genomic DNA. Translation: ADB74805.1.
RefSeqYP_003409176.1. NC_013757.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB74805; ADB74805; Gobs_2120.
GeneID8753791.
KEGGgob:Gobs_2120.
PATRIC32173361. VBIGeoObs49253_2095.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMAHARWVEP.

Enzyme and pathway databases

BioCycGOBS526225:GI00-2148-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD2SFQ0_GEOOG
AccessionPrimary (citable) accession number: D2SFQ0
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: April 16, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)