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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Gobs_2120

Organism
Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciGOBS526225:GI00-2148-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Gobs_2120Imported
OrganismiGeodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20)Imported
Taxonomic identifieri526225 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeGeodermatophilaceaeGeodermatophilus
ProteomesiUP000001382 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiCIESEAF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D2SFQ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTRGSARRP TPPAGEPFVV TEHPSSGAEL RLERNGVPCC WDLPEGPPAA
60 70 80 90 100
RGRALPAVPT MGGDGGGLPT WDAGRYAVEQ WTDDRVVVVL AGRRLRGRHV
110 120 130 140 150
LFRSPDGGWS VRALDAPAEG APLVPMLATA GELPPSAQDH DWGYEFKWDG
160 170 180 190 200
VRALAVVEAG GLALWARSGT DITVRYPELS LPTALTGHDA VVDGEVVALD
210 220 230 240 250
ARGRPDFGAL QGRMHRTGPE VRRMAATTPV TYLVFDLLAW EGESLLALPY
260 270 280 290 300
AQRRERLEAL GVAGERWVPT PWFRGGGAAV LAASRDNGLE GIVAKRLDSP
310 320 330 340 350
YRPGLRGPDW RKVKNVRTQA VVVGGWRPGQ GRRAGGVGSL LVGVHDDAGR
360 370 380 390 400
LVYAGHVGTG FTAAALAELQ PLFTPAHRPP FADALPREVT RDARWVAPEL
410 420 430
VGEVAFAAWT ADGRMRHPSW RGLRDDLAPE DVVEEW
Length:436
Mass (Da):46,914
Last modified:March 2, 2010 - v1
Checksum:i16FC31108F163438
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001867 Genomic DNA. Translation: ADB74805.1.
RefSeqiWP_012948241.1. NC_013757.1.
YP_003409176.1. NC_013757.1.

Genome annotation databases

EnsemblBacteriaiADB74805; ADB74805; Gobs_2120.
KEGGigob:Gobs_2120.
PATRICi32173361. VBIGeoObs49253_2095.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001867 Genomic DNA. Translation: ADB74805.1.
RefSeqiWP_012948241.1. NC_013757.1.
YP_003409176.1. NC_013757.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADB74805; ADB74805; Gobs_2120.
KEGGigob:Gobs_2120.
PATRICi32173361. VBIGeoObs49253_2095.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiCIESEAF.

Enzyme and pathway databases

BioCyciGOBS526225:GI00-2148-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25078 / DSM 43160 / JCM 3152 / G-20Imported.

Entry informationi

Entry nameiD2SFQ0_GEOOG
AccessioniPrimary (citable) accession number: D2SFQ0
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: April 29, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.