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D2SFQ0

- D2SFQ0_GEOOG

UniProt

D2SFQ0 - D2SFQ0_GEOOG

Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Gobs_2120

Organism
Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (02 Mar 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciGOBS526225:GI00-2148-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, ligase domain proteinImported
    Gene namesi
    Ordered Locus Names:Gobs_2120Imported
    OrganismiGeodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20)Imported
    Taxonomic identifieri526225 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeGeodermatophilaceaeGeodermatophilus
    ProteomesiUP000001382: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiHARWVEP.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D2SFQ0-1 [UniParc]FASTAAdd to Basket

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    MPTRGSARRP TPPAGEPFVV TEHPSSGAEL RLERNGVPCC WDLPEGPPAA    50
    RGRALPAVPT MGGDGGGLPT WDAGRYAVEQ WTDDRVVVVL AGRRLRGRHV 100
    LFRSPDGGWS VRALDAPAEG APLVPMLATA GELPPSAQDH DWGYEFKWDG 150
    VRALAVVEAG GLALWARSGT DITVRYPELS LPTALTGHDA VVDGEVVALD 200
    ARGRPDFGAL QGRMHRTGPE VRRMAATTPV TYLVFDLLAW EGESLLALPY 250
    AQRRERLEAL GVAGERWVPT PWFRGGGAAV LAASRDNGLE GIVAKRLDSP 300
    YRPGLRGPDW RKVKNVRTQA VVVGGWRPGQ GRRAGGVGSL LVGVHDDAGR 350
    LVYAGHVGTG FTAAALAELQ PLFTPAHRPP FADALPREVT RDARWVAPEL 400
    VGEVAFAAWT ADGRMRHPSW RGLRDDLAPE DVVEEW 436
    Length:436
    Mass (Da):46,914
    Last modified:March 2, 2010 - v1
    Checksum:i16FC31108F163438
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001867 Genomic DNA. Translation: ADB74805.1.
    RefSeqiYP_003409176.1. NC_013757.1.

    Genome annotation databases

    EnsemblBacteriaiADB74805; ADB74805; Gobs_2120.
    GeneIDi8753791.
    KEGGigob:Gobs_2120.
    PATRICi32173361. VBIGeoObs49253_2095.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001867 Genomic DNA. Translation: ADB74805.1 .
    RefSeqi YP_003409176.1. NC_013757.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADB74805 ; ADB74805 ; Gobs_2120 .
    GeneIDi 8753791.
    KEGGi gob:Gobs_2120.
    PATRICi 32173361. VBIGeoObs49253_2095.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi HARWVEP.

    Enzyme and pathway databases

    BioCyci GOBS526225:GI00-2148-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25078 / DSM 43160 / JCM 3152 / G-20Imported.

    Entry informationi

    Entry nameiD2SFQ0_GEOOG
    AccessioniPrimary (citable) accession number: D2SFQ0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 2, 2010
    Last sequence update: March 2, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3