D2SFQ0 (D2SFQ0_GEOOG) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD, ligase domain protein EMBL ADB74805.1

Gene names

Ordered Locus Names:

Gobs_2120

Organism

Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) [Complete proteome] [HAMAP]

Taxonomic identifier

526225 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Geodermatophilaceae › Geodermatophilus › Geodermatophilus obscurus

Protein attributes

Sequence length	436 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADB74805.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2SFQ0 [UniParc]. Last modified March 2, 2010. Version 1. Checksum: 16FC31108F163438	FASTA	436	46,914
	10 20 30 40 50 60 MPTRGSARRP TPPAGEPFVV TEHPSSGAEL RLERNGVPCC WDLPEGPPAA RGRALPAVPT 70 80 90 100 110 120 MGGDGGGLPT WDAGRYAVEQ WTDDRVVVVL AGRRLRGRHV LFRSPDGGWS VRALDAPAEG 130 140 150 160 170 180 APLVPMLATA GELPPSAQDH DWGYEFKWDG VRALAVVEAG GLALWARSGT DITVRYPELS 190 200 210 220 230 240 LPTALTGHDA VVDGEVVALD ARGRPDFGAL QGRMHRTGPE VRRMAATTPV TYLVFDLLAW 250 260 270 280 290 300 EGESLLALPY AQRRERLEAL GVAGERWVPT PWFRGGGAAV LAASRDNGLE GIVAKRLDSP 310 320 330 340 350 360 YRPGLRGPDW RKVKNVRTQA VVVGGWRPGQ GRRAGGVGSL LVGVHDDAGR LVYAGHVGTG 370 380 390 400 410 420 FTAAALAELQ PLFTPAHRPP FADALPREVT RDARWVAPEL VGEVAFAAWT ADGRMRHPSW 430 RGLRDDLAPE DVVEEW

References

[1]

"The complete genome of Geodermatophilus obscurus DSM 43160." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Munk A.C., Brettin T., Detter J.C., Han C., Larimer F., Land M. , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Schneider S., Klenk H.-P., Eisen J.A. Submitted (JAN-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25078 / DSM 43160 / JCM 3152 / G-20.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001867 Genomic DNA. Translation: ADB74805.1.
RefSeq	YP_003409176.1. NC_013757.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADB74805; ADB74805; Gobs_2120.
GeneID	8753791.
KEGG	gob:Gobs_2120.
PATRIC	32173361. VBIGeoObs49253_2095.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222509.
KO	K01971.
OMA	VCKRLDS.
Enzyme and pathway databases
BioCyc	GOBS526225:GI00-2148-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2SFQ0_GEOOG

Accession

Primary (citable) accession number: D2SFQ0

Entry history

Integrated into UniProtKB/TrEMBL:	March 2, 2010
Last sequence update:	March 2, 2010
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)