D2SEB0 (D2SEB0_GEOOG) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Deoxyribonuclease/rho motif-related TRAM EMBL ADB74582.1

Gene names

Ordered Locus Names:

Gobs_1879 EMBL ADB74582.1

Organism

Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) [Complete proteome] [HAMAP] EMBL ADB74582.1

Taxonomic identifier

526225 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Geodermatophilaceae › Geodermatophilus › Geodermatophilus obscurus

Protein attributes

Sequence length	440 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	RNA methylation Inferred from electronic annotation. Source: GOC RNA processing Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA methyltransferase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2SEB0 [UniParc]. Last modified March 2, 2010. Version 1. Checksum: E1E8F6CA69356376	FASTA	440	46,224
	10 20 30 40 50 60 MAERRPRRRP AAPTHPDRGG GWAGREFEVT VGPVAHGGHC VARHEGRVVF VRHTLPGERV 70 80 90 100 110 120 VVRVTEDRQP GFCRADAVEV LEAAPDRVPR PCPYSGPGRC GGCDWQHVAH EGQLRLKAEV 130 140 150 160 170 180 VREQLTRLAG LTAEDPVVRD LTVEALPGGP LRWRTRARFA VDRAGAPGLR RHRSHDLVLL 190 200 210 220 230 240 EDCPITVEPA ARAVLDRRWP GAGAVDVAVD SAGTVTTTRL DRGGRPQSTQ VLRAGEDGGG 250 260 270 280 290 300 WDDAREPARR AARWAAGRDW EVEGTGFWQV HPAAADALTG TVAGYAAVRA GETVLDLYAG 310 320 330 340 350 360 AGLFGGALAP AVGSAGRVVC VEADEAACAA AQANLAALTQ AEVWQGEVDA EGLIGLLAEL 370 380 390 400 410 420 DAEPDVIVLD PPRAGAGTAV SRVLAAAGPR AVVYVACDPA SLARDVAAFA AGGYRLSGLR 430 440 GFDAFPMTAH VECVALLEPA

References

[1]

"The complete genome of Geodermatophilus obscurus DSM 43160." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Munk A.C., Brettin T., Detter J.C., Han C., Larimer F., Land M. , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Schneider S., Klenk H.-P., Eisen J.A. Submitted (JAN-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25078 / DSM 43160 / JCM 3152 / G-20.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001867 Genomic DNA. Translation: ADB74582.1.
RefSeq	YP_003408953.1. NC_013757.1.
3D structure databases
ProteinModelPortal	D2SEB0.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADB74582; ADB74582; Gobs_1879.
GeneID	8753550.
KEGG	gob:Gobs_1879.
PATRIC	32172880. VBIGeoObs49253_1855.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000029865.
KO	K00599.
OMA	CVERISH.
Enzyme and pathway databases
BioCyc	GOBS526225:GI00-1907-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012340. NA-bd_OB-fold. IPR002792. TRAM_dom. IPR010280. U5_MeTrfase. [Graphical view]
Pfam	PF01938. TRAM. 1 hit. PF05958. tRNA_U5-meth_tr. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50926. TRAM. 1 hit. PS01230. TRMA_1. 1 hit. PS01231. TRMA_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2SEB0_GEOOG

Accession

Primary (citable) accession number: D2SEB0

Entry history

Integrated into UniProtKB/TrEMBL:	March 2, 2010
Last sequence update:	March 2, 2010
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)