D2SDI4 (D2SDI4_GEOOG) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase EMBL ADB74437.1

Gene names

Ordered Locus Names:

Gobs_1723

Organism

Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) [Complete proteome] [HAMAP]

Taxonomic identifier

526225 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Geodermatophilaceae › Geodermatophilus › Geodermatophilus obscurus

Protein attributes

Sequence length	451 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL ADB74437.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2SDI4 [UniParc]. Last modified March 2, 2010. Version 1. Checksum: 0E7B8C1730831E6A	FASTA	451	46,944
	10 20 30 40 50 60 MTDLLTGPHT VAQERRLVTE LPGPRSRELA ARRAAAVTSA VGSVLPVYIE RAAGGVVVDV 70 80 90 100 110 120 DGNSFIDLGS GIAVTNVGHA APEVVAAVQA QVAAFTHTCF MVGPYEGYVA VAEELDRLTP 130 140 150 160 170 180 GDHEKRTALF NTGAEAVENA VKVARVATGR SAVVVFDHAY HGRTNLTMAL TAKNMPYKHG 190 200 210 220 230 240 FGPFAGEVYR VPMSYPYRDE PGTTGEQAAA RAIDLIETQI GAANVAAVLI EPIQGEGGFV 250 260 270 280 290 300 VPAPGFLPAL TDWCRRSGAV FIADEVQTGF CRTGAWFASE HEGVVPDLIT TAKGIAGGMP 310 320 330 340 350 360 LAGVTGRAEL MDAVHTGGLG GTYGGNPVSC AAALASIRIM RELDLNAAAR AIEATMLPRL 370 380 390 400 410 420 RALQERTGVV GDVRGRGAML AVELVEPGTN EPDSALTNAI SKACHAEGVI TLTAGTHSNV 430 440 450 LRFLPPLVIG QDLLTEGLDV LDAAFDAHVG K

References

[1]

"The complete genome of Geodermatophilus obscurus DSM 43160." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Munk A.C., Brettin T., Detter J.C., Han C., Larimer F., Land M. , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Schneider S., Klenk H.-P., Eisen J.A. Submitted (JAN-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25078 / DSM 43160 / JCM 3152 / G-20.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001867 Genomic DNA. Translation: ADB74437.1.
RefSeq	YP_003408808.1. NC_013757.1.
3D structure databases
ProteinModelPortal	D2SDI4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADB74437; ADB74437; Gobs_1723.
GeneID	8753394.
KEGG	gob:Gobs_1723.
PATRIC	32172576. VBIGeoObs49253_1703.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000020206.
KO	K07250.
OMA	CRTGAWF.
Enzyme and pathway databases
BioCyc	GOBS526225:GI00-1751-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2SDI4_GEOOG

Accession

Primary (citable) accession number: D2SDI4

Entry history

Integrated into UniProtKB/TrEMBL:	March 2, 2010
Last sequence update:	March 2, 2010
Last modified:	May 1, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)