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D2RCM8 (D2RCM8_GARV4) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:HMPREF0424_0034 EMBL ADB13641.1
OrganismGardnerella vaginalis (strain 409-05) [Complete proteome] [HAMAP] EMBL ADB13641.1
Taxonomic identifier553190 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella

Protein attributes

Sequence length554 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D2RCM8 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: CD735CB36A5CDD47

FASTA55460,692
        10         20         30         40         50         60 
MKQINSNNEE EIQTAVTGQI EKISSITDKN DIKENRANSV EKILFMYATA VSDVGTVRSN 

        70         80         90        100        110        120 
NQDSAFAGEH LAAICDGMGG HAGGDTASTI AIRSLAHIEQ DSRPHDVKTV SSMMETSIMA 

       130        140        150        160        170        180 
AHDAIVGKAK RERRLAGMGT TVTAVTLVRG YWVLAHLGDS RAYLLRDNHL MRMTTDHSYV 

       190        200        210        220        230        240 
QHLIDTGHIT PEEARNHPQR NVVMRVLGDF DIDPRPDIAL RSAHPSDRWL LCSDGLCGVL 

       250        260        270        280        290        300 
EDSTIQDVMS SISNQEECAQ KLVSMALRAG STDNVTAVIA DATLALDADA FDLPHQTPLI 

       310        320        330        340        350        360 
GGAASKDLES IADIVNKAVA SAPALREDKN SPAQRAAALA QDDDNSKNPD EGTISITRIV 

       370        380        390        400        410        420 
QPSHIREEVG ELHTPDTNEI PIVKKKNGKV STDPHDPDVA RAVKHEQDEA HRAHSLRRRW 

       430        440        450        460        470        480 
TRIGISLGIL LVLFVISGVG YGVYAWTQTQ YYIGKDSNKV VIYQGVPTNI FGIALSHKVE 

       490        500        510        520        530        540 
STDIPVNKLD KSWQDQLKEG ISFGSLVEAR GHASLIRREM RAREQEKLNE QNQKKLENKI 

       550 
NKNKDNAKQG GKTS 

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References

[1]"Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential."
Yeoman C.J., Yildirim S., Thomas S.M., Durkin A.S., Torralba M., Sutton G., Buhay C.J., Ding Y., Dugan-Rocha S.P., Muzny D.M., Qin X., Gibbs R.A., Leigh S.R., Stumpf R., White B.A., Highlander S.K., Nelson K.E., Wilson B.A.
PLoS ONE 5:E12411-E12411(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 409-05.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001849 Genomic DNA. Translation: ADB13641.1.
RefSeqYP_003373305.1. NC_013721.1.

3D structure databases

ProteinModelPortalD2RCM8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB13641; ADB13641; HMPREF0424_0034.
GeneID8709651.
KEGGgva:HMPREF0424_0034.
PATRIC32146070. VBIGarVag136958_0030.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000235782.
KOK01090.
OMANQDSGYA.
OrthoDBEOG65N17S.

Enzyme and pathway databases

BioCycGVAG553190:GJPT-34-MONOMER.

Family and domain databases

Gene3D3.60.40.10. 1 hit.
InterProIPR001932. PP2C-like_dom.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERPTHR13832. PTHR13832. 1 hit.
PfamPF00481. PP2C. 1 hit.
[Graphical view]
SMARTSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMSSF81606. SSF81606. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD2RCM8_GARV4
AccessionPrimary (citable) accession number: D2RCM8
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: April 16, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)