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D2RBW0 (D2RBW0_GARV4) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118 EMBL ADB13727.1
Ordered Locus Names:HMPREF0424_1094 EMBL ADB13727.1
OrganismGardnerella vaginalis (strain 409-05) [Complete proteome] [HAMAP] EMBL ADB13727.1
Taxonomic identifier553190 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella

Protein attributes

Sequence length399 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. HAMAP-Rule MF_00118 RuleBase RU000325

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. HAMAP-Rule MF_00118 RuleBase RU000325

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding83 – 875GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding138 – 1414GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D2RBW0 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: 8168EAA2BCA13D9F

FASTA39943,941
        10         20         30         40         50         60 
MAKEKYERTK PHVNIGTIGH VDHGKTTLTA AISKVLHGEY PDLNPQYDFD QIDAAPEEKE 

        70         80         90        100        110        120 
RGITINIAHI EYQTAERHYA HVDAPGHADY VKNMITGAAQ MDGAILVVAA TDGPMAQTRE 

       130        140        150        160        170        180 
HVLLAKQVGV PKILVALNKC DMVDDPELID LVEEEVRDLL EENGFDRDCP VIRTSAYGAL 

       190        200        210        220        230        240 
HDDAPDHEKW VETVKELMKA VDEYIPTPTH DLDKPFLMPI EDVFTISGRG TVVTGRVERG 

       250        260        270        280        290        300 
KLPINTPVEI VGLRPTQTTT VTSIETFHKQ MDEAEAGDNT GLLLRGINRT DVERGQVVAA 

       310        320        330        340        350        360 
PGSVTPHTKF EGEVYVLTKD EGGRHSPFFS NYRPQFYFRT TDVTGVITLP DGVEMVQPGD 

       370        380        390 
HATFTVELIQ AIAMEEGLTF AVREGGRTVG SGRVTKILA 

« Hide

References

[1]"Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential."
Yeoman C.J., Yildirim S., Thomas S.M., Durkin A.S., Torralba M., Sutton G., Buhay C.J., Ding Y., Dugan-Rocha S.P., Muzny D.M., Qin X., Gibbs R.A., Leigh S.R., Stumpf R., White B.A., Highlander S.K., Nelson K.E., Wilson B.A.
PLoS ONE 5:E12411-E12411(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 409-05.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001849 Genomic DNA. Translation: ADB13727.1.
RefSeqYP_003374295.1. NC_013721.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB13727; ADB13727; HMPREF0424_1094.
GeneID8709395.
KEGGgva:HMPREF0424_1094.
PATRIC32148000. VBIGarVag136958_0959.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.
OMAGDHATFG.
OrthoDBEOG6R5C6X.

Enzyme and pathway databases

BioCycGVAG553190:GJPT-1089-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD2RBW0_GARV4
AccessionPrimary (citable) accession number: D2RBW0
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: June 11, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)