Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Prephenate dehydrogenase

Gene

HMPREF0424_0483

Organism
Gardnerella vaginalis (strain 409-05)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Enzyme and pathway databases

BioCyciGVAG553190:GJPT-484-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Prephenate dehydrogenaseImported (EC:1.3.1.12Imported)
Gene namesi
Ordered Locus Names:HMPREF0424_0483Imported
OrganismiGardnerella vaginalis (strain 409-05)Imported
Taxonomic identifieri553190 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaBifidobacterialesBifidobacteriaceaeGardnerella
ProteomesiUP000001888 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi553190.HMPREF0424_0483.

Structurei

3D structure databases

ProteinModelPortaliD2RA89.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000043495.
KOiK04517.
OMAiVAFVGAH.
OrthoDBiEOG6B8XMB.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR008927. 6-PGluconate_DH_C-like.
IPR016040. NAD(P)-bd_dom.
IPR003099. Prephen_DH.
[Graphical view]
PfamiPF02153. PDH. 1 hit.
[Graphical view]
SUPFAMiSSF48179. SSF48179. 1 hit.
PROSITEiPS51176. PDH_ADH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D2RA89-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVEDAEFSQK FSVGIVGLGL IGGSLAKRLA KLANCNVYAW NRHNEPYDEA
60 70 80 90 100
KSLGITCVEK VQDLAKLRPN VLILCNALAA MPSILHEVAP YIDKSCTTIS
110 120 130 140 150
DVGSVKTLVR EQVKDAGLQD CYVGAHPMAG SEFTGWKASS GELLNGALWA
160 170 180 190 200
LTVDDSTEFW RVRNILQMIV SLCKNRAIVL DDATHDNSAA LISHMPHVVA
210 220 230 240 250
TALANVLCEQ SNRAIALQLS AGSWRDMTRV ALTDPQRTRA MVSENRHNTA
260 270 280 290 300
KLLRSVISEL TFAANMLDND VETADALEQE FFAKAQSWRE YKYLQRNSSK
310 320 330 340 350
TSMQQSDAAN SRLWKYDSQI NWQQELLESA RLGESIVELS GFNINESSQL
360
LLRSDASLRN V
Length:361
Mass (Da):39,937
Last modified:March 2, 2010 - v1
Checksum:i62E16A42F88A4305
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001849 Genomic DNA. Translation: ADB13786.1.
RefSeqiWP_004110388.1. NC_013721.1.

Genome annotation databases

EnsemblBacteriaiADB13786; ADB13786; HMPREF0424_0483.
KEGGigva:HMPREF0424_0483.
PATRICi32146924. VBIGarVag136958_0436.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001849 Genomic DNA. Translation: ADB13786.1.
RefSeqiWP_004110388.1. NC_013721.1.

3D structure databases

ProteinModelPortaliD2RA89.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi553190.HMPREF0424_0483.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADB13786; ADB13786; HMPREF0424_0483.
KEGGigva:HMPREF0424_0483.
PATRICi32146924. VBIGarVag136958_0436.

Phylogenomic databases

HOGENOMiHOG000043495.
KOiK04517.
OMAiVAFVGAH.
OrthoDBiEOG6B8XMB.

Enzyme and pathway databases

BioCyciGVAG553190:GJPT-484-MONOMER.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR008927. 6-PGluconate_DH_C-like.
IPR016040. NAD(P)-bd_dom.
IPR003099. Prephen_DH.
[Graphical view]
PfamiPF02153. PDH. 1 hit.
[Graphical view]
SUPFAMiSSF48179. SSF48179. 1 hit.
PROSITEiPS51176. PDH_ADH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential."
    Yeoman C.J., Yildirim S., Thomas S.M., Durkin A.S., Torralba M., Sutton G., Buhay C.J., Ding Y., Dugan-Rocha S.P., Muzny D.M., Qin X., Gibbs R.A., Leigh S.R., Stumpf R., White B.A., Highlander S.K., Nelson K.E., Wilson B.A.
    PLoS ONE 5:E12411-E12411(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 409-05Imported.

Entry informationi

Entry nameiD2RA89_GARV4
AccessioniPrimary (citable) accession number: D2RA89
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: July 22, 2015
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.