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D2RA89 (D2RA89_GARV4) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=1.3.1.12 EMBL ADB13786.1
Gene names
Ordered Locus Names:HMPREF0424_0483 EMBL ADB13786.1
OrganismGardnerella vaginalis (strain 409-05) [Complete proteome] [HAMAP] EMBL ADB13786.1
Taxonomic identifier553190 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella

Protein attributes

Sequence length361 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
D2RA89 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: 62E16A42F88A4305

FASTA36139,937
        10         20         30         40         50         60 
MVEDAEFSQK FSVGIVGLGL IGGSLAKRLA KLANCNVYAW NRHNEPYDEA KSLGITCVEK 

        70         80         90        100        110        120 
VQDLAKLRPN VLILCNALAA MPSILHEVAP YIDKSCTTIS DVGSVKTLVR EQVKDAGLQD 

       130        140        150        160        170        180 
CYVGAHPMAG SEFTGWKASS GELLNGALWA LTVDDSTEFW RVRNILQMIV SLCKNRAIVL 

       190        200        210        220        230        240 
DDATHDNSAA LISHMPHVVA TALANVLCEQ SNRAIALQLS AGSWRDMTRV ALTDPQRTRA 

       250        260        270        280        290        300 
MVSENRHNTA KLLRSVISEL TFAANMLDND VETADALEQE FFAKAQSWRE YKYLQRNSSK 

       310        320        330        340        350        360 
TSMQQSDAAN SRLWKYDSQI NWQQELLESA RLGESIVELS GFNINESSQL LLRSDASLRN 


V 

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References

[1]"Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential."
Yeoman C.J., Yildirim S., Thomas S.M., Durkin A.S., Torralba M., Sutton G., Buhay C.J., Ding Y., Dugan-Rocha S.P., Muzny D.M., Qin X., Gibbs R.A., Leigh S.R., Stumpf R., White B.A., Highlander S.K., Nelson K.E., Wilson B.A.
PLoS ONE 5:E12411-E12411(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 409-05.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001849 Genomic DNA. Translation: ADB13786.1.
RefSeqYP_003373724.1. NC_013721.1.

3D structure databases

ProteinModelPortalD2RA89.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB13786; ADB13786; HMPREF0424_0483.
GeneID8709101.
KEGGgva:HMPREF0424_0483.
PATRIC32146924. VBIGarVag136958_0436.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000043495.
KOK04517.
OMALALDCGS.
OrthoDBEOG6B8XMB.

Enzyme and pathway databases

BioCycGVAG553190:GJPT-484-MONOMER.

Family and domain databases

Gene3D3.40.50.720. 1 hit.
InterProIPR008927. 6-PGluconate_DH_C-like.
IPR016040. NAD(P)-bd_dom.
IPR003099. Prephen_DH.
[Graphical view]
PfamPF02153. PDH. 1 hit.
[Graphical view]
SUPFAMSSF48179. SSF48179. 1 hit.
PROSITEPS51176. PDH_ADH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD2RA89_GARV4
AccessionPrimary (citable) accession number: D2RA89
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: November 13, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)