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D2R9R6 (D2R9R6_GARV4) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribose-5-phosphate isomerase A HAMAP-Rule MF_00170
EC=5.3.1.6 HAMAP-Rule MF_00170
Alternative name(s):
Phosphoriboisomerase A HAMAP-Rule MF_00170
Gene names
Name:rpiA HAMAP-Rule MF_00170 EMBL ADB14073.1
Ordered Locus Names:HMPREF0424_0296
OrganismGardnerella vaginalis (strain 409-05) [Complete proteome] [HAMAP]
Taxonomic identifier553190 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Gardnerella ›

Protein attributes

Sequence length232 AA.
Sequence statusComplete.
Protein existenceInferred from homology

Sequences

Sequence LengthMass (Da)Tools
D2R9R6 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: F9EA50D1E094EAB5

FASTA23225,460
        10         20         30         40         50         60 
MDKAQQDALK KAAGIEAAKI VKNGMMVGLG TGSTVRFLVD ELGRRVKEEG LSFTGVTTSR 

        70         80         90        100        110        120 
RTQEQAEGYG IKILDINEVD HIDVTIDGSD EVDKNFNGIK GGGAALLWEK IVAINSDRIV 

       130        140        150        160        170        180 
WIVDASKVVD TIGKFPLPVE VIPFGSAQVI RKFEKRGYKP VLRLDADGKE VRTDENNFVV 

       190        200        210        220        230 
DLHMERIEHP QELAKDLIET VGVVEHGLFL NMVDTVIVGD PNGPRTLTNP NK

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References

[1]"Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential."
Yeoman C.J., Yildirim S., Thomas S.M., Durkin A.S., Torralba M., Sutton G., Buhay C.J., Ding Y., Dugan-Rocha S.P., Muzny D.M., Qin X., Gibbs R.A., Leigh S.R., Stumpf R., White B.A., Highlander S.K., Nelson K.E., Wilson B.A.
PLoS ONE 5:E12411-E12411(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 409-05.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001849 Genomic DNA. Translation: ADB14073.1.
RefSeqYP_003373551.1. NC_013721.1.

3D structure databases

ProteinModelPortalD2R9R6.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB14073; ADB14073; HMPREF0424_0296.
GeneID8709034.
KEGGgva:HMPREF0424_0296.
PATRIC32146582. VBIGarVag136958_0275.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000276369.
KOK01807.
OMASTTAYFI.

Enzyme and pathway databases

BioCycGVAG553190:GJPT-300-MONOMER.
UniPathwayUPA00115; UER00412.

Family and domain databases

HAMAPMF_00170. Rib_5P_isom_A.
InterProIPR004788. Ribose5P_isomerase_typA.
IPR020672. Ribose5P_isomerase_typA_subgr.
[Graphical view]
PANTHERPTHR11934. PTHR11934. 1 hit.
PfamPF06026. Rib_5-P_isom_A. 1 hit.
[Graphical view]
TIGRFAMsTIGR00021. rpiA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD2R9R6_GARV4
AccessionPrimary (citable) accession number: D2R9R6
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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