D2QNF6 (D2QNF6_SPILD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Isocitrate dehydrogenase EMBL ADB39345.1
EC=1.1.1.42 EMBL ADB39345.1

Gene names

Ordered Locus Names:

Slin_3335 EMBL ADB39345.1

Organism

Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) [Complete proteome] [HAMAP] EMBL ADB39345.1

Taxonomic identifier

504472 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Cytophagia › Cytophagales › Cytophagaceae › Spirosoma › Spirosoma linguale

Protein attributes

Sequence length	482 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family. RuleBase RU004443

Ontologies

Keywords
Molecular function	Oxidoreductase RuleBase RU004444 EMBL ADB39345.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glyoxylate cycle Inferred from electronic annotation. Source: InterPro tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular_function	NAD binding Inferred from electronic annotation. Source: InterPro isocitrate dehydrogenase (NADP+) activity Inferred from electronic annotation. Source: EC magnesium ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2QNF6 [UniParc]. Last modified March 2, 2010. Version 1. Checksum: 344B51C0110A704D	FASTA	482	52,935
	10 20 30 40 50 60 MSYSIPVTVA YGDGIGPEIM EATLRILEAA KAPLAYETIQ IGEKVYQSGH SAGIRPEAWE 70 80 90 100 110 120 SLRRTKVFLK APITTPQGGG FKSLNVTTRK MLGLYANVRP CISYAPFVAT KHPTMDVVII 130 140 150 160 170 180 RENEEDLYAG IEHQQTPEVV QCLKLISRPG CEKIVRYAFN YARQYGRSKV TCFTKDNIMK 190 200 210 220 230 240 QTDGLFHQVF DEIAKEYPEI EAEHWIVDIG AAKLADTPEA FDVIVMPNLY GDILSDVAAQ 250 260 270 280 290 300 IAGSVGLAGS SNIGEEVAMF EAIHGSAPRR AGQNLANPSG LLLGAIMMLV HLGEGEVASK 310 320 330 340 350 360 VHNAWLKTLE DGIHTYDIYK ESVSTERVGT KEFADAVIAR MGQLPTQLKA VHYASVKAEP 370 380 390 400 410 420 IKDKLSVRKP VTTETVGVDI FLYHEDRDAA LLGEGLKQYT AGPLSLSMIT NRGVKVWPDG 430 440 450 460 470 480 FAETFCTDHW RCRFKAGDVN NVPYEEILQL QAKLTEAGYR IIKTENLCTF DGKPAFSAGQ GA

References

[1]

"The complete chromosome of Spirosoma linguale DSM 74." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Mikhailova N., Ovchinnikova G., Saunders E., Brettin T., Detter J.C., Han C., Larimer F. , Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindal B., Schutze A., Schneider S., Goker M., Klenk H.-P., Eisen J.A. Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33905 / DSM 74 / LMG 10896.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001769 Genomic DNA. Translation: ADB39345.1.
RefSeq	YP_003388144.1. NC_013730.1.
3D structure databases
ProteinModelPortal	D2QNF6.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADB39345; ADB39345; Slin_3335.
GeneID	8727088.
KEGG	sli:Slin_3335.
PATRIC	32436597. VBISpiLin97822_3332.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000021113.
KO	K00031.
OMA	YAFNYAR.
Enzyme and pathway databases
BioCyc	SLIN504472:GHKB-3360-MONOMER.
Family and domain databases
Gene3D	3.40.718.10. 1 hit.
InterPro	IPR019818. IsoCit/isopropylmalate_DH_CS. IPR001804. Isocitrate/isopropylmalate_DH. IPR014273. Isocitrate_DH_aproteobac-typ. IPR024084. IsoPropMal-DH-like_dom. [Graphical view]
PANTHER	PTHR11835. PTHR11835. 1 hit.
Pfam	PF00180. Iso_dh. 1 hit. [Graphical view]
TIGRFAMs	TIGR02924. ICDH_alpha. 1 hit.
PROSITE	PS00470. IDH_IMDH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2QNF6_SPILD

Accession

Primary (citable) accession number: D2QNF6

Entry history

Integrated into UniProtKB/TrEMBL:	March 2, 2010
Last sequence update:	March 2, 2010
Last modified:	May 29, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)