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Protein
Submitted name:

Isocitrate dehydrogenase

Gene

Slin_3335

Organism
Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. isocitrate dehydrogenase (NADP+) activity Source: UniProtKB-EC
  2. magnesium ion binding Source: InterPro
  3. NAD binding Source: InterPro

GO - Biological processi

  1. glyoxylate cycle Source: InterPro
  2. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Enzyme and pathway databases

BioCyciSLIN504472:GHKB-3360-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Isocitrate dehydrogenaseImported (EC:1.1.1.42Imported)
Gene namesi
Ordered Locus Names:Slin_3335Imported
OrganismiSpirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)Imported
Taxonomic identifieri504472 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeSpirosoma
ProteomesiUP000002028: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD2QNF6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the isocitrate and isopropylmalate dehydrogenases family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000021113.
KOiK00031.
OMAiWMHVEKL.

Family and domain databases

Gene3Di3.40.718.10. 1 hit.
InterProiIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR014273. Isocitrate_DH_aproteobac-typ.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERiPTHR11835. PTHR11835. 1 hit.
PfamiPF00180. Iso_dh. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02924. ICDH_alpha. 1 hit.
PROSITEiPS00470. IDH_IMDH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D2QNF6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSYSIPVTVA YGDGIGPEIM EATLRILEAA KAPLAYETIQ IGEKVYQSGH
60 70 80 90 100
SAGIRPEAWE SLRRTKVFLK APITTPQGGG FKSLNVTTRK MLGLYANVRP
110 120 130 140 150
CISYAPFVAT KHPTMDVVII RENEEDLYAG IEHQQTPEVV QCLKLISRPG
160 170 180 190 200
CEKIVRYAFN YARQYGRSKV TCFTKDNIMK QTDGLFHQVF DEIAKEYPEI
210 220 230 240 250
EAEHWIVDIG AAKLADTPEA FDVIVMPNLY GDILSDVAAQ IAGSVGLAGS
260 270 280 290 300
SNIGEEVAMF EAIHGSAPRR AGQNLANPSG LLLGAIMMLV HLGEGEVASK
310 320 330 340 350
VHNAWLKTLE DGIHTYDIYK ESVSTERVGT KEFADAVIAR MGQLPTQLKA
360 370 380 390 400
VHYASVKAEP IKDKLSVRKP VTTETVGVDI FLYHEDRDAA LLGEGLKQYT
410 420 430 440 450
AGPLSLSMIT NRGVKVWPDG FAETFCTDHW RCRFKAGDVN NVPYEEILQL
460 470 480
QAKLTEAGYR IIKTENLCTF DGKPAFSAGQ GA
Length:482
Mass (Da):52,935
Last modified:March 2, 2010 - v1
Checksum:i344B51C0110A704D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001769 Genomic DNA. Translation: ADB39345.1.
RefSeqiWP_012927866.1. NC_013730.1.
YP_003388144.1. NC_013730.1.

Genome annotation databases

EnsemblBacteriaiADB39345; ADB39345; Slin_3335.
GeneIDi8727088.
KEGGisli:Slin_3335.
PATRICi32436597. VBISpiLin97822_3332.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001769 Genomic DNA. Translation: ADB39345.1.
RefSeqiWP_012927866.1. NC_013730.1.
YP_003388144.1. NC_013730.1.

3D structure databases

ProteinModelPortaliD2QNF6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADB39345; ADB39345; Slin_3335.
GeneIDi8727088.
KEGGisli:Slin_3335.
PATRICi32436597. VBISpiLin97822_3332.

Phylogenomic databases

HOGENOMiHOG000021113.
KOiK00031.
OMAiWMHVEKL.

Enzyme and pathway databases

BioCyciSLIN504472:GHKB-3360-MONOMER.

Family and domain databases

Gene3Di3.40.718.10. 1 hit.
InterProiIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR014273. Isocitrate_DH_aproteobac-typ.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERiPTHR11835. PTHR11835. 1 hit.
PfamiPF00180. Iso_dh. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02924. ICDH_alpha. 1 hit.
PROSITEiPS00470. IDH_IMDH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33905 / DSM 74 / LMG 10896Imported.

Entry informationi

Entry nameiD2QNF6_SPILD
AccessioniPrimary (citable) accession number: D2QNF6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: February 4, 2015
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.