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D2QK37

- D2QK37_SPILD

UniProt

D2QK37 - D2QK37_SPILD

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Protein
Submitted name: D-alanine--D-alanine ligase domain protein
Gene
Slin_1108
Organism
Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Cell wall formation By similarity.SAAS annotations

Catalytic activityi

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine.SAAS annotations

Cofactori

Binds 2 magnesium or manganese ions per subunit By similarity.SAAS annotations

Pathwayi

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. D-alanine-D-alanine ligase activity Source: InterPro
  3. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. peptidoglycan biosynthetic process Source: UniProtKB-UniPathway
  2. regulation of cell shape Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseSAAS annotationsImported

Keywords - Biological processi

Cell shape, Cell wall biogenesis/degradationSAAS annotations, Peptidoglycan synthesisSAAS annotations

Keywords - Ligandi

ATP-bindingSAAS annotations, MagnesiumSAAS annotations, ManganeseSAAS annotations, Metal-bindingSAAS annotations, Nucleotide-binding

Enzyme and pathway databases

BioCyciSLIN504472:GHKB-1113-MONOMER.
UniPathwayiUPA00219.

Names & Taxonomyi

Protein namesi
Submitted name:
D-alanine--D-alanine ligase domain proteinImported
Gene namesi
Ordered Locus Names:Slin_1108Imported
OrganismiSpirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)Imported
Taxonomic identifieri504472 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeSpirosoma
ProteomesiUP000002028: Chromosome

Subcellular locationi

Cytoplasm By similarity SAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotations

Family & Domainsi

Sequence similaritiesi

Contains 1 ATP-grasp domain.
Contains ATP-grasp domain.SAAS annotations

Phylogenomic databases

HOGENOMiHOG000011592.
KOiK01921.
OMAiQGLLEWY.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERiPTHR23132. PTHR23132. 1 hit.
PfamiPF07478. Dala_Dala_lig_C. 2 hits.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
SUPFAMiSSF52440. SSF52440. 1 hit.
PROSITEiPS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D2QK37-1 [UniParc]FASTAAdd to Basket

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MKIGIFFGGP AREREVSFAG GRTALANLDK GLFEPVLVFV DGRGRFRLVS    50
PDFLQSPSLH DALPQDSSGF SVYDESLAVD TLDAILPELR PEQFRDHFDL 100
AFLAMHGPDC EDGAIQGLLE WHKMPYTGPG LVGSAVGINK ILQNELIALA 150
NGQKKKTATI SRDDYEQADK AQFFQSLVEH LGLPIVIKAP HQGSSIGVAI 200
VREADLAQFC RSVEQCFFTM SIQPDGWSKL SGWTSLSGTE KHELAQKMVS 250
LDSGISFPVV IEQTGEVIKH PADFVARLDA LMAQSSQPIT LASLNAEDEV 300
LFEEFITGQE FSCGVIQDDD QVAIALPPTE IYNVTSFDFE SKYKLNTTKK 350
RIPVETSLEN NRKIQLAVAQ VFTRLGINVY SRIDGFLTPA GDVLLHDPNT 400
IPGMSPSSLI FKQMAEIGLN LANSLTYLIR QSLRERIRTG KDTFHLKHLL 450
AELDAQLAHR KANPLPERVV SFGSGDEEFI AAKQQYNELA ASGTVRPSLM 500
YIKSKQESHE IPVNLLFKDT IAELETALSQ PRHPLLLETA ELARHITERY 550
V 551
Length:551
Mass (Da):60,944
Last modified:March 2, 2010 - v1
Checksum:iB63B528D14BC5272
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001769 Genomic DNA. Translation: ADB37159.1.
RefSeqiWP_012925710.1. NC_013730.1.
YP_003385958.1. NC_013730.1.

Genome annotation databases

EnsemblBacteriaiADB37159; ADB37159; Slin_1108.
GeneIDi8724841.
KEGGisli:Slin_1108.
PATRICi32432109. VBISpiLin97822_1105.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001769 Genomic DNA. Translation: ADB37159.1 .
RefSeqi WP_012925710.1. NC_013730.1.
YP_003385958.1. NC_013730.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADB37159 ; ADB37159 ; Slin_1108 .
GeneIDi 8724841.
KEGGi sli:Slin_1108.
PATRICi 32432109. VBISpiLin97822_1105.

Phylogenomic databases

HOGENOMi HOG000011592.
KOi K01921.
OMAi QGLLEWY.

Enzyme and pathway databases

UniPathwayi UPA00219 .
BioCyci SLIN504472:GHKB-1113-MONOMER.

Family and domain databases

Gene3Di 3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
InterProi IPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view ]
PANTHERi PTHR23132. PTHR23132. 1 hit.
Pfami PF07478. Dala_Dala_lig_C. 2 hits.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view ]
SUPFAMi SSF52440. SSF52440. 1 hit.
PROSITEi PS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33905 / DSM 74 / LMG 10896.

Entry informationi

Entry nameiD2QK37_SPILD
AccessioniPrimary (citable) accession number: D2QK37
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: September 3, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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