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D2Q6C3 (D2Q6C3_BIFDB) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Beta-galactosidase PIRNR PIRNR001084
Short name=Beta-gal PIRNR PIRNR001084
EC=3.2.1.23 PIRNR PIRNR001084
Gene names
Ordered Locus Names:BDP_1908
OrganismBifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) [Complete proteome] [HAMAP] EMBL ADB10488.1
Taxonomic identifier401473 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium ›

Protein attributes

Sequence length700 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Ontologies

Keywords
   Molecular functionGlycosidase PIRNR PIRNR001084 EMBL ADB10488.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentbeta-galactosidase complex

Inferred from electronic annotation. Source: InterPro

   Molecular_functionbeta-galactosidase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1611Proton donor By similarity PIRSR PIRSR001084-1
Active site3201Nucleophile By similarity PIRSR PIRSR001084-1
Binding site1221Substrate By similarity PIRSR PIRSR001084-2
Binding site1601Substrate By similarity PIRSR PIRSR001084-2
Binding site3281Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
D2Q6C3 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: 6E66AF4CEC6F5E51

FASTA70078,202
        10         20         30         40         50         60 
MTTRRTFSWP RLLTRNGGGI AFGGDYNPDQ WSEEIWDDDI RLMKQAGVNT VALAIFSWDR 

        70         80         90        100        110        120 
IQPTEDRWNF GWLDRIIDKL GKAGIAVDLA SATATAPLWL YESHPEVLPR DKYGHQVNAG 

       130        140        150        160        170        180 
SRQSWSPTSP VFKTYALTMC RKLAERYGDN PYVTAWHMGN EYGWNNREDY SDNALAAFRK 

       190        200        210        220        230        240 
WCERKYGTVD ALNAAWGTTF WGQEMNGFDE VLIPRFMGTD SMVNPGQKLD FERFGNDMLL 

       250        260        270        280        290        300 
DFYKAERDAI AEICPDKPFT TNFMVSTDQC CMDYADWAEE VDFVSNDHYF HEGESHLDEL 

       310        320        330        340        350        360 
ACSDALMDSL ALGKPWYVME HSTSAVQWKP LNIRKRKGEI VRDSLAHVAM GADAINFFQW 

       370        380        390        400        410        420 
RASAFGSEAF HSAMLPHAGE DTRVFRQVCE LGSVLKDLSA AGMQGSTLER SDTAILFSAE 

       430        440        450        460        470        480 
SEWATRSETL PSMKLSHWHD VRDWYRAFLD AGQRADVVPL KYDWSAYSVV VLPSVLMLSA 

       490        500        510        520        530        540 
ADTQRLADFT AAGGQVVIGY ATGLIDEHFH TWLGGYPGAG NGLLRKMLGI RGEEFNILGC 

       550        560        570        580        590        600 
EAEGEPCEIE LGGGMDGAVT RLWQNDVNVE GPDTEVLATY SGKSADEWEL DGTAAITRNP 

       610        620        630        640        650        660 
YGAGAAYFVG CDLNVADLTR FVRANLTTSG GEDDPRYGDV LHTVRKSADA TFDFYMPRGK 

       670        680        690        700 
QEVTLRGIEG EPICQFHSEA GPEGPGSYVI HRNGMLITRR

« Hide

References

[1]"The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity."
Ventura M., Turroni F., Zomer A., Foroni E., Giubellini V., Bottacini F., Canchaya C., Claesson M.J., He F., Mantzourani M., Mulas L., Ferrarini A., Gao B., Delledonne M., Henrissat B., Coutinho P., Oggioni M., Gupta R.S. expand/collapse author list , Zhang Z., Beighton D., Fitzgerald G.F., O'Toole P.W., van Sinderen D.
PLoS Genet. 5:E1000785-E1000785(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27534 / DSM 20436 / JCM 1195 / Bd1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001750 Genomic DNA. Translation: ADB10488.1.
RefSeqYP_003361312.1. NC_013714.1.

3D structure databases

ProteinModelPortalD2Q6C3.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB10488; ADB10488; BDP_1908.
GeneID8692673.
KEGGbde:BDP_1908.
PATRIC31957913. VBIBifDen66312_1804.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000117811.
KOK12308.
OMAADAINFF.

Enzyme and pathway databases

BioCycBDEN401473:GH09-1790-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR013738. Beta_galactosidase_Trimer.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD2Q6C3_BIFDB
AccessionPrimary (citable) accession number: D2Q6C3
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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