D2Q5X3 (D2Q5X3_BIFDB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
GadB glutamate decarboxylase EMBL ADB10338.1
EC=4.1.1.15 EMBL ADB10338.1

Gene names

Name:	gadB EMBL ADB10338.1
Ordered Locus Names:	BDP_1749

Organism

Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) [Complete proteome] [HAMAP] EMBL ADB10338.1

Taxonomic identifier

401473 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium › Bifidobacterium dentium

Protein attributes

Sequence length	476 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382 EMBL ADB10338.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2Q5X3 [UniParc]. Last modified March 2, 2010. Version 1. Checksum: 8E97A12B3159B6FC	FASTA	476	53,864
	10 20 30 40 50 60 MSIMHSNINT IAAGYGYSGG ADSDSVEVNP LFARPKEAKA FSKFKIPQEG SLPETAYQVV 70 80 90 100 110 120 HDDAMLDGNA RLNLATFVST WMDDYANRLY MEAADKNMID KDEYPKTAEV ESRCWHMLAD 130 140 150 160 170 180 LWHAPDPMNT IGTSTIGSSE ACMLGGLALK RRWKEAREKA GLPADRPNLV MSSAVQVCWE 190 200 210 220 230 240 KFCNYFDVEP RYVPISEEHK VLDGYDLDKY VDENTIGVVA IMGVTYTGMY EPVKKISDAL 250 260 270 280 290 300 DRIEERTGLD VRIHVDAASG GMIAPFIQPD LQWDFRVKRV YSISTSGHKY GLVYPGLGWV 310 320 330 340 350 360 VWRETADLPE SLIFKVSYLG GEMPTFALNF SRPGAQVLLQ YYMFLRLGFE GYRRVQQAAH 370 380 390 400 410 420 DVAKYLSGEI AKMDDFTLWN DGSDIPVFAW MLKDKPDRKW NLYDLQDRLR MKGWLVPAYP 430 440 450 460 470 MPVDLTQVTV QRIVVRNGFS HDMAESFLKD LKACVKYLDG LKAPMPSEAR VSGFHH

References

[1]

"The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity." Ventura M., Turroni F., Zomer A., Foroni E., Giubellini V., Bottacini F., Canchaya C., Claesson M.J., He F., Mantzourani M., Mulas L., Ferrarini A., Gao B., Delledonne M., Henrissat B., Coutinho P., Oggioni M., Gupta R.S. , Zhang Z., Beighton D., Fitzgerald G.F., O'Toole P.W., van Sinderen D. PLoS Genet. 5:E1000785-E1000785(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27534 / DSM 20436 / JCM 1195 / Bd1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001750 Genomic DNA. Translation: ADB10338.1.
RefSeq	YP_003361162.1. NC_013714.1.
3D structure databases
ProteinModelPortal	D2Q5X3.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADB10338; ADB10338; BDP_1749.
GeneID	8692523.
KEGG	bde:BDP_1749.
PATRIC	31957611. VBIBifDen66312_1653.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000070228.
KO	K01580.
OMA	PMDKEHM.
Enzyme and pathway databases
BioCyc	BDEN401473:GH09-1640-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D2Q5X3_BIFDB

Accession

Primary (citable) accession number: D2Q5X3

Entry history

Integrated into UniProtKB/TrEMBL:	March 2, 2010
Last sequence update:	March 2, 2010
Last modified:	May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)