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D2Q5X3 (D2Q5X3_BIFDB) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length476 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
D2Q5X3 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: 8E97A12B3159B6FC

FASTA47653,864
        10         20         30         40         50         60 
MSIMHSNINT IAAGYGYSGG ADSDSVEVNP LFARPKEAKA FSKFKIPQEG SLPETAYQVV 

        70         80         90        100        110        120 
HDDAMLDGNA RLNLATFVST WMDDYANRLY MEAADKNMID KDEYPKTAEV ESRCWHMLAD 

       130        140        150        160        170        180 
LWHAPDPMNT IGTSTIGSSE ACMLGGLALK RRWKEAREKA GLPADRPNLV MSSAVQVCWE 

       190        200        210        220        230        240 
KFCNYFDVEP RYVPISEEHK VLDGYDLDKY VDENTIGVVA IMGVTYTGMY EPVKKISDAL 

       250        260        270        280        290        300 
DRIEERTGLD VRIHVDAASG GMIAPFIQPD LQWDFRVKRV YSISTSGHKY GLVYPGLGWV 

       310        320        330        340        350        360 
VWRETADLPE SLIFKVSYLG GEMPTFALNF SRPGAQVLLQ YYMFLRLGFE GYRRVQQAAH 

       370        380        390        400        410        420 
DVAKYLSGEI AKMDDFTLWN DGSDIPVFAW MLKDKPDRKW NLYDLQDRLR MKGWLVPAYP 

       430        440        450        460        470 
MPVDLTQVTV QRIVVRNGFS HDMAESFLKD LKACVKYLDG LKAPMPSEAR VSGFHH 

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References

[1]"The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity."
Ventura M., Turroni F., Zomer A., Foroni E., Giubellini V., Bottacini F., Canchaya C., Claesson M.J., He F., Mantzourani M., Mulas L., Ferrarini A., Gao B., Delledonne M., Henrissat B., Coutinho P., Oggioni M., Gupta R.S. expand/collapse author list , Zhang Z., Beighton D., Fitzgerald G.F., O'Toole P.W., van Sinderen D.
PLoS Genet. 5:E1000785-E1000785(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27534 / DSM 20436 / JCM 1195 / Bd1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001750 Genomic DNA. Translation: ADB10338.1.
RefSeqYP_003361162.1. NC_013714.1.

3D structure databases

ProteinModelPortalD2Q5X3.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB10338; ADB10338; BDP_1749.
GeneID8692523.
KEGGbde:BDP_1749.
PATRIC31957611. VBIBifDen66312_1653.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000070228.
KOK01580.
OMAMIGRLFN.
OrthoDBEOG6TFCPW.

Enzyme and pathway databases

BioCycBDEN401473:GH09-1693-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD2Q5X3_BIFDB
AccessionPrimary (citable) accession number: D2Q5X3
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: May 14, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)