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D2Q5X3

- D2Q5X3_BIFDB

UniProt

D2Q5X3 - D2Q5X3_BIFDB

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Protein

Glutamate decarboxylase

Gene

gadB

Organism
Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

Note: Pyridoxal phosphate.UniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciBDEN401473:GH09-1693-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:gadBImported
Ordered Locus Names:BDP_1749Imported
OrganismiBifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1)Imported
Taxonomic identifieri401473 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium
ProteomesiUP000008693: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD2Q5X3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000070228.
KOiK01580.
OMAiMIGRLFN.
OrthoDBiEOG6TFCPW.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

D2Q5X3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSIMHSNINT IAAGYGYSGG ADSDSVEVNP LFARPKEAKA FSKFKIPQEG
60 70 80 90 100
SLPETAYQVV HDDAMLDGNA RLNLATFVST WMDDYANRLY MEAADKNMID
110 120 130 140 150
KDEYPKTAEV ESRCWHMLAD LWHAPDPMNT IGTSTIGSSE ACMLGGLALK
160 170 180 190 200
RRWKEAREKA GLPADRPNLV MSSAVQVCWE KFCNYFDVEP RYVPISEEHK
210 220 230 240 250
VLDGYDLDKY VDENTIGVVA IMGVTYTGMY EPVKKISDAL DRIEERTGLD
260 270 280 290 300
VRIHVDAASG GMIAPFIQPD LQWDFRVKRV YSISTSGHKY GLVYPGLGWV
310 320 330 340 350
VWRETADLPE SLIFKVSYLG GEMPTFALNF SRPGAQVLLQ YYMFLRLGFE
360 370 380 390 400
GYRRVQQAAH DVAKYLSGEI AKMDDFTLWN DGSDIPVFAW MLKDKPDRKW
410 420 430 440 450
NLYDLQDRLR MKGWLVPAYP MPVDLTQVTV QRIVVRNGFS HDMAESFLKD
460 470
LKACVKYLDG LKAPMPSEAR VSGFHH
Length:476
Mass (Da):53,864
Last modified:March 2, 2010 - v1
Checksum:i8E97A12B3159B6FC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001750 Genomic DNA. Translation: ADB10338.1.
RefSeqiYP_003361162.1. NC_013714.1.

Genome annotation databases

EnsemblBacteriaiADB10338; ADB10338; BDP_1749.
GeneIDi8692523.
KEGGibde:BDP_1749.
PATRICi31957611. VBIBifDen66312_1653.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001750 Genomic DNA. Translation: ADB10338.1 .
RefSeqi YP_003361162.1. NC_013714.1.

3D structure databases

ProteinModelPortali D2Q5X3.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADB10338 ; ADB10338 ; BDP_1749 .
GeneIDi 8692523.
KEGGi bde:BDP_1749.
PATRICi 31957611. VBIBifDen66312_1653.

Phylogenomic databases

HOGENOMi HOG000070228.
KOi K01580.
OMAi MIGRLFN.
OrthoDBi EOG6TFCPW.

Enzyme and pathway databases

BioCyci BDEN401473:GH09-1693-MONOMER.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
InterProi IPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view ]
PANTHERi PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27534 / DSM 20436 / JCM 1195 / Bd1Imported.

Entry informationi

Entry nameiD2Q5X3_BIFDB
AccessioniPrimary (citable) accession number: D2Q5X3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: November 26, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3