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D2Q5X3

- D2Q5X3_BIFDB

UniProt

D2Q5X3 - D2Q5X3_BIFDB

Protein

Glutamate decarboxylase

Gene

gadB

Organism
Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (02 Mar 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. glutamate decarboxylase activity Source: UniProtKB-EC
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. glutamate metabolic process Source: InterPro

    Keywords - Molecular functioni

    DecarboxylaseUniRule annotation, Lyase

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Enzyme and pathway databases

    BioCyciBDEN401473:GH09-1693-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
    Gene namesi
    Name:gadBImported
    Ordered Locus Names:BDP_1749Imported
    OrganismiBifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1)Imported
    Taxonomic identifieri401473 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium
    ProteomesiUP000008693: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD2Q5X3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000070228.
    KOiK01580.
    OMAiMIGRLFN.
    OrthoDBiEOG6TFCPW.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    InterProiIPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view]
    PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D2Q5X3-1 [UniParc]FASTAAdd to Basket

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    MSIMHSNINT IAAGYGYSGG ADSDSVEVNP LFARPKEAKA FSKFKIPQEG    50
    SLPETAYQVV HDDAMLDGNA RLNLATFVST WMDDYANRLY MEAADKNMID 100
    KDEYPKTAEV ESRCWHMLAD LWHAPDPMNT IGTSTIGSSE ACMLGGLALK 150
    RRWKEAREKA GLPADRPNLV MSSAVQVCWE KFCNYFDVEP RYVPISEEHK 200
    VLDGYDLDKY VDENTIGVVA IMGVTYTGMY EPVKKISDAL DRIEERTGLD 250
    VRIHVDAASG GMIAPFIQPD LQWDFRVKRV YSISTSGHKY GLVYPGLGWV 300
    VWRETADLPE SLIFKVSYLG GEMPTFALNF SRPGAQVLLQ YYMFLRLGFE 350
    GYRRVQQAAH DVAKYLSGEI AKMDDFTLWN DGSDIPVFAW MLKDKPDRKW 400
    NLYDLQDRLR MKGWLVPAYP MPVDLTQVTV QRIVVRNGFS HDMAESFLKD 450
    LKACVKYLDG LKAPMPSEAR VSGFHH 476
    Length:476
    Mass (Da):53,864
    Last modified:March 2, 2010 - v1
    Checksum:i8E97A12B3159B6FC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001750 Genomic DNA. Translation: ADB10338.1.
    RefSeqiYP_003361162.1. NC_013714.1.

    Genome annotation databases

    EnsemblBacteriaiADB10338; ADB10338; BDP_1749.
    GeneIDi8692523.
    KEGGibde:BDP_1749.
    PATRICi31957611. VBIBifDen66312_1653.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001750 Genomic DNA. Translation: ADB10338.1 .
    RefSeqi YP_003361162.1. NC_013714.1.

    3D structure databases

    ProteinModelPortali D2Q5X3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADB10338 ; ADB10338 ; BDP_1749 .
    GeneIDi 8692523.
    KEGGi bde:BDP_1749.
    PATRICi 31957611. VBIBifDen66312_1653.

    Phylogenomic databases

    HOGENOMi HOG000070228.
    KOi K01580.
    OMAi MIGRLFN.
    OrthoDBi EOG6TFCPW.

    Enzyme and pathway databases

    BioCyci BDEN401473:GH09-1693-MONOMER.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    InterProi IPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view ]
    PANTHERi PTHR11999:SF1. PTHR11999:SF1. 1 hit.
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 27534 / DSM 20436 / JCM 1195 / Bd1Imported.

    Entry informationi

    Entry nameiD2Q5X3_BIFDB
    AccessioniPrimary (citable) accession number: D2Q5X3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 2, 2010
    Last sequence update: March 2, 2010
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3