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D2PPE9 (D2PPE9_KRIFD) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length676 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1611Proton donor By similarity
Active site3181Nucleophile By similarity PIRSR PIRSR001084-1
Metal binding1691Zinc By similarity PIRSR PIRSR001084-3
Binding site1221Substrate By similarity PIRSR PIRSR001084-2
Binding site1601Substrate By similarity PIRSR PIRSR001084-2
Binding site3261Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
D2PPE9 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: 5A9371B077149E0D

FASTA67673,758
        10         20         30         40         50         60 
MSFTGNGAGP AGWLPGVSAI SYGGDYNPEQ WPEESWPGDI ELMRQAGVNL VSIGIFSWAL 

        70         80         90        100        110        120 
IEPRRGEHDF GWMDRLFELL HAAGIRISLG TPTASPPAWF FHEHPEARVV TRDGTTLGFG 

       130        140        150        160        170        180 
SRGMASPSSP AYREASVSIA TALARRYGNH PALAVWHVHN EYGAPVSECY SEQSVRAFRR 

       190        200        210        220        230        240 
WLQGRYESLD ALNAAWGTAF WGQRYLEWQH ISAPAVSASV VNPAQRLDFA RFTSDALLQC 

       250        260        270        280        290        300 
FVAERDAIRA ECPQVPITTN FMAGTCESVD LWKWADAVDI VANDHYLVAE DPRSHVGLAL 

       310        320        330        340        350        360 
SADLTRSLAR GKPWILMEHS TSGVNWQPRN LAKRSGELAR NALTHFGRGA DAVMFFQWKA 

       370        380        390        400        410        420 
SRSGAEKFHS AMVPHAGTRS RIWSEVCALG AGLGTLGEVL GSTVSAEAAV LWDWESFWAQ 

       430        440        450        460        470        480 
DLEWRPSEDL SHRERVNAFY DRLWRDQLTV DFAHPEADLA AYKLVVAPAS YLLTRAAADN 

       490        500        510        520        530        540 
LRRYVEGGGT LVVSYFSAIV DEHDAVHDGG FVAPLRDVLG LTVEEFLPLR AGETVRLTPS 

       550        560        570        580        590        600 
EVVGDVWTDD VALEGAEVVA AFEDGPAAGK PAITRNTLGA GAAWYVATRL DADQLAVVLE 

       610        620        630        640        650        660 
GAYRDAGLTP GDGPEDLELV RRRHADAEYL IAVNHGTKPA DLPVGGTDLL TGEAGASLKV 

       670 
EAGGVRVLRT DRHQER 

« Hide

References

[1]"The complete genome of Kribbella flavida DSM 17836."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M. expand/collapse author list , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Pukall R., Klenk H.-P., Eisen J.A.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 17836 / JCM 10339 / NBRC 14399.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001736 Genomic DNA. Translation: ADB30911.1.
RefSeqYP_003379710.1. NC_013729.1.

3D structure databases

ProteinModelPortalD2PPE9.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB30911; ADB30911; Kfla_1817.
GeneID8718411.
KEGGkfl:Kfla_1817.
PATRIC32234047. VBIKriFla67707_1806.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000117811.
KOK12308.
OMARIQPTED.

Enzyme and pathway databases

BioCycKFLA479435:GI0F-1834-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
3.40.50.880. 1 hit.
InterProIPR013739. Beta_galactosidase_C.
IPR013738. Beta_galactosidase_Trimer.
IPR029062. Class_I_gatase-like.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08533. Glyco_hydro_42C. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF52317. SSF52317. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD2PPE9_KRIFD
AccessionPrimary (citable) accession number: D2PPE9
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: July 9, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)