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D2P6R2

- D2P6R2_LISM2

UniProt

D2P6R2 - D2P6R2_LISM2

Protein

Phosphopentomutase

Gene

drm

Organism
Listeria monocytogenes serotype 1/2a (strain 08-5923)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (02 Mar 2010)
      Previous versions | rss
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    Functioni

    Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotationSAAS annotation

    Catalytic activityi

    2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotationSAAS annotation
    Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotationSAAS annotation

    Cofactori

    Binds 1 or 2 manganese ions.UniRule annotationSAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi14 – 141ManganeseUniRule annotation
    Metal bindingi292 – 2921ManganeseUniRule annotation
    Metal bindingi328 – 3281ManganeseUniRule annotation
    Metal bindingi329 – 3291ManganeseUniRule annotation
    Metal bindingi340 – 3401ManganeseUniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: InterPro
    2. manganese ion binding Source: UniProtKB-HAMAP
    3. phosphopentomutase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
    2. cellular metabolic compound salvage Source: InterPro
    3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotation

    Keywords - Ligandi

    ManganeseUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciLMON637381:GH7Z-2142-MONOMER.
    UniPathwayiUPA00087; UER00173.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
    Alternative name(s):
    PhosphodeoxyribomutaseUniRule annotation
    Gene namesi
    Name:drmImported
    Synonyms:deoBUniRule annotation
    Ordered Locus Names:LM5923_2106Imported
    OrganismiListeria monocytogenes serotype 1/2a (strain 08-5923)Imported
    Taxonomic identifieri637381 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
    ProteomesiUP000006922: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliD2P6R2.
    SMRiD2P6R2. Positions 3-393.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the phosphopentomutase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000008159.
    KOiK01839.
    OMAiEHTREHI.

    Family and domain databases

    Gene3Di3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPiMF_00740. Phosphopentomut.
    InterProiIPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view]
    PfamiPF01676. Metalloenzyme. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001491. Ppentomutase. 1 hit.
    SUPFAMiSSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsiTIGR01696. deoB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D2P6R2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPDKFKRVHV VVMDSVGIGE APDAAKFGDF DVDTFGHIAK HVGGLKMPEM    50
    GKLGLSNIRE IEGIKKAEKP LAYYTKMQEA SNGKDTMTGH WEIMGLYIDT 100
    PFRVFPDGFP DDLINQIEEK TGRKVIGNKP ASGTEIMAEL GEEHVKTGAL 150
    IVYTSADSVL QIAAHEDVVP LEELYEICEF CRKITLDDPY MLGRIIARPF 200
    VGEPGAFVRT PNRHDYALKP FKPTVMDALK DGGKDVIAIG KISDIFDGEG 250
    VTESIRTKSN MDGMDQFIAV LDKDFNGMSF LNLVDFDALF GHRRDPQGYA 300
    DALVDFDGRL VEVMEKLTDD DLLIITADHG NDPTYTGTDH TREFVPLLVY 350
    SPRFKNGGSE LELRKTFADL GATVADNFDV KMPEYGTSFL RDLK 394
    Length:394
    Mass (Da):43,746
    Last modified:March 2, 2010 - v1
    Checksum:i1D2D6202D2C95D23
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001604 Genomic DNA. Translation: ADB71947.1.
    RefSeqiYP_003417309.1. NC_013768.1.

    Genome annotation databases

    EnsemblBacteriaiADB71947; ADB71947; LM5923_2106.
    GeneIDi8758900.
    KEGGilmy:LM5923_2106.
    PATRICi32258044. VBILisMon5116_2123.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001604 Genomic DNA. Translation: ADB71947.1 .
    RefSeqi YP_003417309.1. NC_013768.1.

    3D structure databases

    ProteinModelPortali D2P6R2.
    SMRi D2P6R2. Positions 3-393.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADB71947 ; ADB71947 ; LM5923_2106 .
    GeneIDi 8758900.
    KEGGi lmy:LM5923_2106.
    PATRICi 32258044. VBILisMon5116_2123.

    Phylogenomic databases

    HOGENOMi HOG000008159.
    KOi K01839.
    OMAi EHTREHI.

    Enzyme and pathway databases

    UniPathwayi UPA00087 ; UER00173 .
    BioCyci LMON637381:GH7Z-2142-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPi MF_00740. Phosphopentomut.
    InterProi IPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view ]
    Pfami PF01676. Metalloenzyme. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001491. Ppentomutase. 1 hit.
    SUPFAMi SSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsi TIGR01696. deoB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak."
      Gilmour M.W., Graham M., Van Domselaar G., Tyler S., Kent H., Trout-Yakel K.M., Larios O., Allen V., Lee B., Nadon C.
      BMC Genomics 11:120-120(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 08-5923Imported.

    Entry informationi

    Entry nameiD2P6R2_LISM2
    AccessioniPrimary (citable) accession number: D2P6R2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 2, 2010
    Last sequence update: March 2, 2010
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3