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D2P6R2

- D2P6R2_LISM2

UniProt

D2P6R2 - D2P6R2_LISM2

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Protein
Phosphopentomutase
Gene
drm, deoB, LM5923_2106
Organism
Listeria monocytogenes serotype 1/2a (strain 08-5923)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity.UniRule annotationSAAS annotations

Catalytic activityi

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotationSAAS annotations
Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotationSAAS annotations

Cofactori

Binds 1 or 2 manganese ions By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi14 – 141Manganese By similarityUniRule annotation
Metal bindingi292 – 2921Manganese By similarityUniRule annotation
Metal bindingi328 – 3281Manganese By similarityUniRule annotation
Metal bindingi329 – 3291Manganese By similarityUniRule annotation
Metal bindingi340 – 3401Manganese By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. manganese ion binding Source: UniProtKB-HAMAP
  3. phosphopentomutase activity Source: UniProtKB-HAMAP
Complete GO annotation...

GO - Biological processi

  1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
  2. cellular metabolic compound salvage Source: InterPro
  3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotations

Keywords - Ligandi

ManganeseUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciLMON637381:GH7Z-2142-MONOMER.
UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
Alternative name(s):
Phosphodeoxyribomutase
Gene namesi
Name:drmImported
Synonyms:deoBUniRule annotation
Ordered Locus Names:LM5923_2106Imported
OrganismiListeria monocytogenes serotype 1/2a (strain 08-5923)Imported
Taxonomic identifieri637381 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
ProteomesiUP000006922: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliD2P6R2.
SMRiD2P6R2. Positions 3-393.

Family & Domainsi

Sequence similaritiesi

Belongs to the phosphopentomutase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000008159.
KOiK01839.
OMAiEHTREHI.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

D2P6R2-1 [UniParc]FASTAAdd to Basket

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MPDKFKRVHV VVMDSVGIGE APDAAKFGDF DVDTFGHIAK HVGGLKMPEM    50
GKLGLSNIRE IEGIKKAEKP LAYYTKMQEA SNGKDTMTGH WEIMGLYIDT 100
PFRVFPDGFP DDLINQIEEK TGRKVIGNKP ASGTEIMAEL GEEHVKTGAL 150
IVYTSADSVL QIAAHEDVVP LEELYEICEF CRKITLDDPY MLGRIIARPF 200
VGEPGAFVRT PNRHDYALKP FKPTVMDALK DGGKDVIAIG KISDIFDGEG 250
VTESIRTKSN MDGMDQFIAV LDKDFNGMSF LNLVDFDALF GHRRDPQGYA 300
DALVDFDGRL VEVMEKLTDD DLLIITADHG NDPTYTGTDH TREFVPLLVY 350
SPRFKNGGSE LELRKTFADL GATVADNFDV KMPEYGTSFL RDLK 394
Length:394
Mass (Da):43,746
Last modified:March 2, 2010 - v1
Checksum:i1D2D6202D2C95D23
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001604 Genomic DNA. Translation: ADB71947.1.
RefSeqiYP_003417309.1. NC_013768.1.

Genome annotation databases

EnsemblBacteriaiADB71947; ADB71947; LM5923_2106.
GeneIDi8758900.
KEGGilmy:LM5923_2106.
PATRICi32258044. VBILisMon5116_2123.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001604 Genomic DNA. Translation: ADB71947.1 .
RefSeqi YP_003417309.1. NC_013768.1.

3D structure databases

ProteinModelPortali D2P6R2.
SMRi D2P6R2. Positions 3-393.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADB71947 ; ADB71947 ; LM5923_2106 .
GeneIDi 8758900.
KEGGi lmy:LM5923_2106.
PATRICi 32258044. VBILisMon5116_2123.

Phylogenomic databases

HOGENOMi HOG000008159.
KOi K01839.
OMAi EHTREHI.

Enzyme and pathway databases

UniPathwayi UPA00087 ; UER00173 .
BioCyci LMON637381:GH7Z-2142-MONOMER.

Family and domain databases

Gene3Di 3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPi MF_00740. Phosphopentomut.
InterProi IPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view ]
Pfami PF01676. Metalloenzyme. 1 hit.
[Graphical view ]
PIRSFi PIRSF001491. Ppentomutase. 1 hit.
SUPFAMi SSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsi TIGR01696. deoB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak."
    Gilmour M.W., Graham M., Van Domselaar G., Tyler S., Kent H., Trout-Yakel K.M., Larios O., Allen V., Lee B., Nadon C.
    BMC Genomics 11:120-120(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 08-5923Imported.

Entry informationi

Entry nameiD2P6R2_LISM2
AccessioniPrimary (citable) accession number: D2P6R2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: June 11, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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