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D2NYA1 (D2NYA1_LISM1) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:LM5578_2629 EMBL ADB69375.1
OrganismListeria monocytogenes serotype 1/2a (strain 08-5578) [Complete proteome] [HAMAP] EMBL ADB69375.1
Taxonomic identifier653938 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria

Protein attributes

Sequence length467 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
D2NYA1 [UniParc].

Last modified March 2, 2010. Version 1.
Checksum: 3DEF1036B7BD94F4

FASTA46753,655
        10         20         30         40         50         60 
MLYSEDDKRK QESYRIPLFG SEEESTSIPK YVLKKEPMEP RIAYQLVKDQ LMDEGNARQN 

        70         80         90        100        110        120 
LATFCQTYME KEAEILMAET LEKNAIDKSE YPQTAELENR CVNILADLWN APKDMSYLGT 

       130        140        150        160        170        180 
STVGSSEACM LGGLAMKFRW RNNAEKRGLD IQAKRPNLII SSGYQVCWEK FCVYWDVDMR 

       190        200        210        220        230        240 
VVPMDKDHLS LDVDKVFDLV DEYTIGIVGI LGITYTGKFD DIQLLDEKVE AYNETNEHQL 

       250        260        270        280        290        300 
VIHIDGASGA MFTPFVNPEL PWDFRLKNVV SINTSGHKYG LVYPGVGWIL WKDKEYLPKE 

       310        320        330        340        350        360 
LIFEVSYLGG SMPTMAINFS RSASQIIGQY YNFLRYGFEG YREIHEKTKK TALYLAKTVE 

       370        380        390        400        410        420 
KSGYFEIIND GANLPIVCYK MKEGLDVEWT LYDLADQLLM KGWQVPAYPL PADLSDTIIQ 

       430        440        450        460 
RFVCRADLGY NVAEEFAADF ADAIHNLEHA RVLYHDKERN DSYGFTH 

« Hide

References

[1]"High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak."
Gilmour M.W., Graham M., Van Domselaar G., Tyler S., Kent H., Trout-Yakel K.M., Larios O., Allen V., Lee B., Nadon C.
BMC Genomics 11:120-120(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 08-5578 EMBL ADB69375.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001602 Genomic DNA. Translation: ADB69375.1.
RefSeqYP_003414737.1. NC_013766.1.

3D structure databases

ProteinModelPortalD2NYA1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADB69375; ADB69375; LM5578_2629.
GeneID8749611.
KEGGlmn:LM5578_2629.
PATRIC35279844. VBILisMon159512_2653.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000070228.
KOK01580.

Enzyme and pathway databases

BioCycLMON653938:GJ8G-2683-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD2NYA1_LISM1
AccessionPrimary (citable) accession number: D2NYA1
Entry history
Integrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: October 16, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)