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D2HXW9

- D2HXW9_AILME

UniProt

D2HXW9 - D2HXW9_AILME

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Protein
Submitted name:

Uncharacterized protein

Gene
CRY1, PANDA_017512
Organism
Ailuropoda melanoleuca (Giant panda)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA photolyase activity Source: InterPro
  2. double-stranded DNA binding Source: Ensembl
  3. transcription factor binding transcription factor activity Source: Ensembl

GO - Biological processi

  1. circadian rhythm Source: Ensembl
  2. DNA repair Source: InterPro
  3. negative regulation of transcription from RNA polymerase II promoter Source: Ensembl
  4. regulation of circadian rhythm Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:CRY1Imported
ORF Names:PANDA_017512Imported
OrganismiAiluropoda melanoleuca (Giant panda)
Taxonomic identifieri9646 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaUrsidaeAiluropoda
ProteomesiUP000008912: Unassembled WGS sequence, UP000008912: Unplaced

Subcellular locationi

GO - Cellular componenti

  1. mitochondrion Source: Ensembl
  2. nucleus Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00500000044813.
HOGENOMiHOG000245622.
KOiK02295.
OMAiFDTDGLP.
OrthoDBiEOG7QG43M.
TreeFamiTF323191.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
InterProiIPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
SUPFAMiSSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEiPS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D2HXW9-1 [UniParc]FASTAAdd to Basket

« Hide

MGVNAVHWFR KGLRLHDNPA LKECIQGADT IRCVYILDPW FAGSSNVGIN    50
RWRFLLQCLE DLDANLRKLN SRLFVIRGQP ADVFPRLFKE WNITKLSIEY 100
DSEPFGKERD AAIKKLATEA GVEVIVRISH TLYDLDKIIE LNGGQPPLTY 150
KRFQTLISKM EPLEIPVETI TSEVIEKCTT PLSDDHDEKY GVPSLEELGF 200
DTDGLPSAVW PGGETEALTR LERHLERKAW VANFERPRMN ANSLLASPTG 250
LSPYLRFGCL SCRLFYFKLT DLYKKVKKNS SPPLSLYGQL LWREFFYTAA 300
TNNPRFDKME GNPICVQIPW DKNPEALAKW AEGRTGFPWI DAIMTQLRQE 350
GWIHHLARHA VACFLTRGDL WISWEEGMKV FEELLLDADW SINAGSWMWL 400
SCSSFFQQFF HCYCPVGFGR RTDPNGDYIR RYLPVLRGFP AKYIYDPWNA 450
PEGIQKVAKC LIGVNYPKPM VNHAEASRLN IERMKQIYQQ LSRYRGLGLL 500
ASVPANPNGN GGLMGYSPGE NIPGCSSSGS CSQGSGILHY AHGDSQQTHL 550
LKQGRSSMGS GLSSGKRPSE EEDTQSIGPK VQRQSTN 587
Length:587
Mass (Da):66,455
Last modified:February 9, 2010 - v1
Checksum:i5DA38266D7896EEA
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei587 – 5871Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ACTA01004465 Genomic DNA. No translation available.
ACTA01012465 Genomic DNA. No translation available.
ACTA01020465 Genomic DNA. No translation available.
ACTA01028465 Genomic DNA. No translation available.
ACTA01036465 Genomic DNA. No translation available.
ACTA01044464 Genomic DNA. No translation available.
ACTA01052464 Genomic DNA. No translation available.
ACTA01060464 Genomic DNA. No translation available.
ACTA01068464 Genomic DNA. No translation available.
ACTA01076464 Genomic DNA. No translation available.
ACTA01084464 Genomic DNA. No translation available.
ACTA01092464 Genomic DNA. No translation available.
ACTA01172458 Genomic DNA. No translation available.
ACTA01180456 Genomic DNA. No translation available.
ACTA01188454 Genomic DNA. No translation available.
ACTA01196452 Genomic DNA. No translation available.
GL193654 Genomic DNA. Translation: EFB22605.1.
RefSeqiXP_002927704.1. XM_002927658.1.

Genome annotation databases

EnsembliENSAMET00000003013; ENSAMEP00000002891; ENSAMEG00000002720.
GeneIDi100484388.
KEGGiaml:100484388.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ACTA01004465 Genomic DNA. No translation available.
ACTA01012465 Genomic DNA. No translation available.
ACTA01020465 Genomic DNA. No translation available.
ACTA01028465 Genomic DNA. No translation available.
ACTA01036465 Genomic DNA. No translation available.
ACTA01044464 Genomic DNA. No translation available.
ACTA01052464 Genomic DNA. No translation available.
ACTA01060464 Genomic DNA. No translation available.
ACTA01068464 Genomic DNA. No translation available.
ACTA01076464 Genomic DNA. No translation available.
ACTA01084464 Genomic DNA. No translation available.
ACTA01092464 Genomic DNA. No translation available.
ACTA01172458 Genomic DNA. No translation available.
ACTA01180456 Genomic DNA. No translation available.
ACTA01188454 Genomic DNA. No translation available.
ACTA01196452 Genomic DNA. No translation available.
GL193654 Genomic DNA. Translation: EFB22605.1 .
RefSeqi XP_002927704.1. XM_002927658.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSAMET00000003013 ; ENSAMEP00000002891 ; ENSAMEG00000002720 .
GeneIDi 100484388.
KEGGi aml:100484388.

Organism-specific databases

CTDi 1407.

Phylogenomic databases

GeneTreei ENSGT00500000044813.
HOGENOMi HOG000245622.
KOi K02295.
OMAi FDTDGLP.
OrthoDBi EOG7QG43M.
TreeFami TF323191.

Family and domain databases

Gene3Di 3.40.50.620. 1 hit.
InterProi IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view ]
Pfami PF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view ]
SUPFAMi SSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEi PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence and de novo assembly of the giant panda genome."
    Li R., Fan W., Tian G., Zhu H., He L., Cai J., Huang Q., Cai Q., Li B., Bai Y., Zhang Z., Zhang Y., Wang W., Li J., Wei F., Li H., Jian M., Li J.
    , Zhang Z., Nielsen R., Li D., Gu W., Yang Z., Xuan Z., Ryder O.A., Leung F.C., Zhou Y., Cao J., Sun X., Fu Y., Fang X., Guo X., Wang B., Hou R., Shen F., Mu B., Ni P., Lin R., Qian W., Wang G., Yu C., Nie W., Wang J., Wu Z., Liang H., Min J., Wu Q., Cheng S., Ruan J., Wang M., Shi Z., Wen M., Liu B., Ren X., Zheng H., Dong D., Cook K., Shan G., Zhang H., Kosiol C., Xie X., Lu Z., Zheng H., Li Y., Steiner C.C., Lam T.T., Lin S., Zhang Q., Li G., Tian J., Gong T., Liu H., Zhang D., Fang L., Ye C., Zhang J., Hu W., Xu A., Ren Y., Zhang G., Bruford M.W., Li Q., Ma L., Guo Y., An N., Hu Y., Zheng Y., Shi Y., Li Z., Liu Q., Chen Y., Zhao J., Qu N., Zhao S., Tian F., Wang X., Wang H., Xu L., Liu X., Vinar T., Wang Y., Lam T.W., Yiu S.M., Liu S., Zhang H., Li D., Huang Y., Wang X., Yang G., Jiang Z., Wang J., Qin N., Li L., Li J., Bolund L., Kristiansen K., Wong G.K., Olson M., Zhang X., Li S., Yang H., Wang J., Wang J.
    Nature 463:311-317(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiD2HXW9_AILME
AccessioniPrimary (citable) accession number: D2HXW9
Entry historyi
Integrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: May 14, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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