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D2HXW9

- D2HXW9_AILME

UniProt

D2HXW9 - D2HXW9_AILME

Protein
Submitted name:

Uncharacterized protein

Gene

CRY1

Organism
Ailuropoda melanoleuca (Giant panda)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 24 (01 Oct 2014)
      Sequence version 1 (09 Feb 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA photolyase activity Source: InterPro
    2. double-stranded DNA binding Source: Ensembl
    3. transcription factor binding transcription factor activity Source: Ensembl

    GO - Biological processi

    1. circadian rhythm Source: Ensembl
    2. DNA repair Source: InterPro
    3. negative regulation of transcription from RNA polymerase II promoter Source: Ensembl
    4. regulation of circadian rhythm Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:CRY1Imported
    ORF Names:PANDA_017512Imported
    OrganismiAiluropoda melanoleuca (Giant panda)
    Taxonomic identifieri9646 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaUrsidaeAiluropoda
    ProteomesiUP000008912: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    1. mitochondrion Source: Ensembl
    2. nucleus Source: Ensembl

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00500000044813.
    HOGENOMiHOG000245622.
    KOiK02295.
    OMAiFDTDGLP.
    OrthoDBiEOG7QG43M.
    TreeFamiTF323191.

    Family and domain databases

    Gene3Di3.40.50.620. 1 hit.
    InterProiIPR006050. DNA_photolyase_N.
    IPR005101. Photolyase_FAD-bd/Cryptochr_C.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view]
    PfamiPF00875. DNA_photolyase. 1 hit.
    PF03441. FAD_binding_7. 1 hit.
    [Graphical view]
    SUPFAMiSSF48173. SSF48173. 1 hit.
    SSF52425. SSF52425. 1 hit.
    PROSITEiPS51645. PHR_CRY_ALPHA_BETA. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    D2HXW9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGVNAVHWFR KGLRLHDNPA LKECIQGADT IRCVYILDPW FAGSSNVGIN    50
    RWRFLLQCLE DLDANLRKLN SRLFVIRGQP ADVFPRLFKE WNITKLSIEY 100
    DSEPFGKERD AAIKKLATEA GVEVIVRISH TLYDLDKIIE LNGGQPPLTY 150
    KRFQTLISKM EPLEIPVETI TSEVIEKCTT PLSDDHDEKY GVPSLEELGF 200
    DTDGLPSAVW PGGETEALTR LERHLERKAW VANFERPRMN ANSLLASPTG 250
    LSPYLRFGCL SCRLFYFKLT DLYKKVKKNS SPPLSLYGQL LWREFFYTAA 300
    TNNPRFDKME GNPICVQIPW DKNPEALAKW AEGRTGFPWI DAIMTQLRQE 350
    GWIHHLARHA VACFLTRGDL WISWEEGMKV FEELLLDADW SINAGSWMWL 400
    SCSSFFQQFF HCYCPVGFGR RTDPNGDYIR RYLPVLRGFP AKYIYDPWNA 450
    PEGIQKVAKC LIGVNYPKPM VNHAEASRLN IERMKQIYQQ LSRYRGLGLL 500
    ASVPANPNGN GGLMGYSPGE NIPGCSSSGS CSQGSGILHY AHGDSQQTHL 550
    LKQGRSSMGS GLSSGKRPSE EEDTQSIGPK VQRQSTN 587
    Length:587
    Mass (Da):66,455
    Last modified:February 9, 2010 - v1
    Checksum:i5DA38266D7896EEA
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei587 – 5871Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ACTA01004465 Genomic DNA. No translation available.
    ACTA01012465 Genomic DNA. No translation available.
    ACTA01020465 Genomic DNA. No translation available.
    ACTA01028465 Genomic DNA. No translation available.
    ACTA01036465 Genomic DNA. No translation available.
    ACTA01044464 Genomic DNA. No translation available.
    ACTA01052464 Genomic DNA. No translation available.
    ACTA01060464 Genomic DNA. No translation available.
    ACTA01068464 Genomic DNA. No translation available.
    ACTA01076464 Genomic DNA. No translation available.
    ACTA01084464 Genomic DNA. No translation available.
    ACTA01092464 Genomic DNA. No translation available.
    ACTA01172458 Genomic DNA. No translation available.
    ACTA01180456 Genomic DNA. No translation available.
    ACTA01188454 Genomic DNA. No translation available.
    ACTA01196452 Genomic DNA. No translation available.
    GL193654 Genomic DNA. Translation: EFB22605.1.
    RefSeqiXP_002927704.1. XM_002927658.1.

    Genome annotation databases

    EnsembliENSAMET00000003013; ENSAMEP00000002891; ENSAMEG00000002720.
    GeneIDi100484388.
    KEGGiaml:100484388.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ACTA01004465 Genomic DNA. No translation available.
    ACTA01012465 Genomic DNA. No translation available.
    ACTA01020465 Genomic DNA. No translation available.
    ACTA01028465 Genomic DNA. No translation available.
    ACTA01036465 Genomic DNA. No translation available.
    ACTA01044464 Genomic DNA. No translation available.
    ACTA01052464 Genomic DNA. No translation available.
    ACTA01060464 Genomic DNA. No translation available.
    ACTA01068464 Genomic DNA. No translation available.
    ACTA01076464 Genomic DNA. No translation available.
    ACTA01084464 Genomic DNA. No translation available.
    ACTA01092464 Genomic DNA. No translation available.
    ACTA01172458 Genomic DNA. No translation available.
    ACTA01180456 Genomic DNA. No translation available.
    ACTA01188454 Genomic DNA. No translation available.
    ACTA01196452 Genomic DNA. No translation available.
    GL193654 Genomic DNA. Translation: EFB22605.1 .
    RefSeqi XP_002927704.1. XM_002927658.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSAMET00000003013 ; ENSAMEP00000002891 ; ENSAMEG00000002720 .
    GeneIDi 100484388.
    KEGGi aml:100484388.

    Organism-specific databases

    CTDi 1407.

    Phylogenomic databases

    GeneTreei ENSGT00500000044813.
    HOGENOMi HOG000245622.
    KOi K02295.
    OMAi FDTDGLP.
    OrthoDBi EOG7QG43M.
    TreeFami TF323191.

    Family and domain databases

    Gene3Di 3.40.50.620. 1 hit.
    InterProi IPR006050. DNA_photolyase_N.
    IPR005101. Photolyase_FAD-bd/Cryptochr_C.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view ]
    Pfami PF00875. DNA_photolyase. 1 hit.
    PF03441. FAD_binding_7. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48173. SSF48173. 1 hit.
    SSF52425. SSF52425. 1 hit.
    PROSITEi PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The sequence and de novo assembly of the giant panda genome."
      Li R., Fan W., Tian G., Zhu H., He L., Cai J., Huang Q., Cai Q., Li B., Bai Y., Zhang Z., Zhang Y., Wang W., Li J., Wei F., Li H., Jian M., Li J.
      , Zhang Z., Nielsen R., Li D., Gu W., Yang Z., Xuan Z., Ryder O.A., Leung F.C., Zhou Y., Cao J., Sun X., Fu Y., Fang X., Guo X., Wang B., Hou R., Shen F., Mu B., Ni P., Lin R., Qian W., Wang G., Yu C., Nie W., Wang J., Wu Z., Liang H., Min J., Wu Q., Cheng S., Ruan J., Wang M., Shi Z., Wen M., Liu B., Ren X., Zheng H., Dong D., Cook K., Shan G., Zhang H., Kosiol C., Xie X., Lu Z., Zheng H., Li Y., Steiner C.C., Lam T.T., Lin S., Zhang Q., Li G., Tian J., Gong T., Liu H., Zhang D., Fang L., Ye C., Zhang J., Hu W., Xu A., Ren Y., Zhang G., Bruford M.W., Li Q., Ma L., Guo Y., An N., Hu Y., Zheng Y., Shi Y., Li Z., Liu Q., Chen Y., Zhao J., Qu N., Zhao S., Tian F., Wang X., Wang H., Xu L., Liu X., Vinar T., Wang Y., Lam T.W., Yiu S.M., Liu S., Zhang H., Li D., Huang Y., Wang X., Yang G., Jiang Z., Wang J., Qin N., Li L., Li J., Bolund L., Kristiansen K., Wong G.K., Olson M., Zhang X., Li S., Yang H., Wang J., Wang J.
      Nature 463:311-317(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiD2HXW9_AILME
    AccessioniPrimary (citable) accession number: D2HXW9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 9, 2010
    Last sequence update: February 9, 2010
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3