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Protein
Submitted name:

Uncharacterized protein

Gene

CRY1

Organism
Ailuropoda melanoleuca (Giant panda)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. core promoter sequence-specific DNA binding Source: Ensembl
  2. DNA photolyase activity Source: InterPro
  3. double-stranded DNA binding Source: Ensembl
  4. transcription factor binding transcription factor activity Source: Ensembl

GO - Biological processi

  1. circadian regulation of gene expression Source: Ensembl
  2. DNA damage induced protein phosphorylation Source: Ensembl
  3. DNA repair Source: InterPro
  4. entrainment of circadian clock by photoperiod Source: Ensembl
  5. gluconeogenesis Source: Ensembl
  6. glucose homeostasis Source: Ensembl
  7. lipid storage Source: Ensembl
  8. negative regulation of circadian rhythm Source: Ensembl
  9. negative regulation of glucocorticoid receptor signaling pathway Source: Ensembl
  10. negative regulation of glucocorticoid secretion Source: Ensembl
  11. negative regulation of G-protein coupled receptor protein signaling pathway Source: Ensembl
  12. negative regulation of protein ubiquitination Source: Ensembl
  13. negative regulation of transcription from RNA polymerase II promoter Source: Ensembl
  14. regulation of DNA damage checkpoint Source: Ensembl
  15. response to glucagon Source: Ensembl
  16. response to insulin Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:CRY1Imported
ORF Names:PANDA_017512Imported
OrganismiAiluropoda melanoleuca (Giant panda)
Taxonomic identifieri9646 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaUrsidaeAiluropoda
ProteomesiUP000008912: Unplaced

Subcellular locationi

GO - Cellular componenti

  1. mitochondrion Source: Ensembl
  2. nucleolus Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00500000044813.
HOGENOMiHOG000245622.
KOiK02295.
OMAiVGPKVQR.
OrthoDBiEOG7QG43M.
TreeFamiTF323191.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
InterProiIPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
SUPFAMiSSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEiPS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D2HXW9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGVNAVHWFR KGLRLHDNPA LKECIQGADT IRCVYILDPW FAGSSNVGIN
60 70 80 90 100
RWRFLLQCLE DLDANLRKLN SRLFVIRGQP ADVFPRLFKE WNITKLSIEY
110 120 130 140 150
DSEPFGKERD AAIKKLATEA GVEVIVRISH TLYDLDKIIE LNGGQPPLTY
160 170 180 190 200
KRFQTLISKM EPLEIPVETI TSEVIEKCTT PLSDDHDEKY GVPSLEELGF
210 220 230 240 250
DTDGLPSAVW PGGETEALTR LERHLERKAW VANFERPRMN ANSLLASPTG
260 270 280 290 300
LSPYLRFGCL SCRLFYFKLT DLYKKVKKNS SPPLSLYGQL LWREFFYTAA
310 320 330 340 350
TNNPRFDKME GNPICVQIPW DKNPEALAKW AEGRTGFPWI DAIMTQLRQE
360 370 380 390 400
GWIHHLARHA VACFLTRGDL WISWEEGMKV FEELLLDADW SINAGSWMWL
410 420 430 440 450
SCSSFFQQFF HCYCPVGFGR RTDPNGDYIR RYLPVLRGFP AKYIYDPWNA
460 470 480 490 500
PEGIQKVAKC LIGVNYPKPM VNHAEASRLN IERMKQIYQQ LSRYRGLGLL
510 520 530 540 550
ASVPANPNGN GGLMGYSPGE NIPGCSSSGS CSQGSGILHY AHGDSQQTHL
560 570 580
LKQGRSSMGS GLSSGKRPSE EEDTQSIGPK VQRQSTN
Length:587
Mass (Da):66,455
Last modified:February 9, 2010 - v1
Checksum:i5DA38266D7896EEA
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei587 – 5871Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACTA01004465 Genomic DNA. No translation available.
ACTA01012465 Genomic DNA. No translation available.
ACTA01020465 Genomic DNA. No translation available.
ACTA01028465 Genomic DNA. No translation available.
ACTA01036465 Genomic DNA. No translation available.
ACTA01044464 Genomic DNA. No translation available.
ACTA01052464 Genomic DNA. No translation available.
ACTA01060464 Genomic DNA. No translation available.
ACTA01068464 Genomic DNA. No translation available.
ACTA01076464 Genomic DNA. No translation available.
ACTA01084464 Genomic DNA. No translation available.
ACTA01092464 Genomic DNA. No translation available.
ACTA01172458 Genomic DNA. No translation available.
ACTA01180456 Genomic DNA. No translation available.
ACTA01188454 Genomic DNA. No translation available.
ACTA01196452 Genomic DNA. No translation available.
GL193654 Genomic DNA. Translation: EFB22605.1.
RefSeqiXP_002927704.1. XM_002927658.1.

Genome annotation databases

EnsembliENSAMET00000003013; ENSAMEP00000002891; ENSAMEG00000002720.
GeneIDi100484388.
KEGGiaml:100484388.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACTA01004465 Genomic DNA. No translation available.
ACTA01012465 Genomic DNA. No translation available.
ACTA01020465 Genomic DNA. No translation available.
ACTA01028465 Genomic DNA. No translation available.
ACTA01036465 Genomic DNA. No translation available.
ACTA01044464 Genomic DNA. No translation available.
ACTA01052464 Genomic DNA. No translation available.
ACTA01060464 Genomic DNA. No translation available.
ACTA01068464 Genomic DNA. No translation available.
ACTA01076464 Genomic DNA. No translation available.
ACTA01084464 Genomic DNA. No translation available.
ACTA01092464 Genomic DNA. No translation available.
ACTA01172458 Genomic DNA. No translation available.
ACTA01180456 Genomic DNA. No translation available.
ACTA01188454 Genomic DNA. No translation available.
ACTA01196452 Genomic DNA. No translation available.
GL193654 Genomic DNA. Translation: EFB22605.1.
RefSeqiXP_002927704.1. XM_002927658.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSAMET00000003013; ENSAMEP00000002891; ENSAMEG00000002720.
GeneIDi100484388.
KEGGiaml:100484388.

Organism-specific databases

CTDi1407.

Phylogenomic databases

GeneTreeiENSGT00500000044813.
HOGENOMiHOG000245622.
KOiK02295.
OMAiVGPKVQR.
OrthoDBiEOG7QG43M.
TreeFamiTF323191.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
InterProiIPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
SUPFAMiSSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEiPS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence and de novo assembly of the giant panda genome."
    Li R., Fan W., Tian G., Zhu H., He L., Cai J., Huang Q., Cai Q., Li B., Bai Y., Zhang Z., Zhang Y., Wang W., Li J., Wei F., Li H., Jian M., Li J.
    , Zhang Z., Nielsen R., Li D., Gu W., Yang Z., Xuan Z., Ryder O.A., Leung F.C., Zhou Y., Cao J., Sun X., Fu Y., Fang X., Guo X., Wang B., Hou R., Shen F., Mu B., Ni P., Lin R., Qian W., Wang G., Yu C., Nie W., Wang J., Wu Z., Liang H., Min J., Wu Q., Cheng S., Ruan J., Wang M., Shi Z., Wen M., Liu B., Ren X., Zheng H., Dong D., Cook K., Shan G., Zhang H., Kosiol C., Xie X., Lu Z., Zheng H., Li Y., Steiner C.C., Lam T.T., Lin S., Zhang Q., Li G., Tian J., Gong T., Liu H., Zhang D., Fang L., Ye C., Zhang J., Hu W., Xu A., Ren Y., Zhang G., Bruford M.W., Li Q., Ma L., Guo Y., An N., Hu Y., Zheng Y., Shi Y., Li Z., Liu Q., Chen Y., Zhao J., Qu N., Zhao S., Tian F., Wang X., Wang H., Xu L., Liu X., Vinar T., Wang Y., Lam T.W., Yiu S.M., Liu S., Zhang H., Li D., Huang Y., Wang X., Yang G., Jiang Z., Wang J., Qin N., Li L., Li J., Bolund L., Kristiansen K., Wong G.K., Olson M., Zhang X., Li S., Yang H., Wang J., Wang J.
    Nature 463:311-317(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiD2HXW9_AILME
AccessioniPrimary (citable) accession number: D2HXW9
Entry historyi
Integrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: March 4, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.