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D2HLR1

- D2HLR1_AILME

UniProt

D2HLR1 - D2HLR1_AILME

Protein
Submitted name:

Uncharacterized protein

Gene

LOC100475733

Organism
Ailuropoda melanoleuca (Giant panda)
Status
Unreviewed - Annotation score: 3 out of 5- Protein predictedi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (09 Feb 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. sequence-specific DNA binding Source: UniProtKB
    2. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. axon target recognition Source: UniProtKB
    2. cell migration in diencephalon Source: UniProtKB
    3. epithelial cell differentiation involved in mammary gland alveolus development Source: UniProtKB
    4. floor plate development Source: UniProtKB
    5. hypothalamus cell migration Source: UniProtKB
    6. inferior colliculus development Source: UniProtKB
    7. lactation Source: UniProtKB
    8. mammary gland lobule development Source: UniProtKB
    9. mammillary body development Source: UniProtKB
    10. mammillothalamic axonal tract development Source: UniProtKB
    11. midbrain development Source: UniProtKB
    12. negative regulation of neuron apoptotic process Source: UniProtKB
    13. somitogenesis Source: UniProtKB
    14. spinal cord development Source: Ensembl
    15. telencephalon cell migration Source: UniProtKB
    16. thalamus development Source: Ensembl
    17. urogenital system development Source: Ensembl
    18. visual learning Source: UniProtKB

    Keywords - Ligandi

    DNA-bindingSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:LOC100475733Imported
    ORF Names:PANDA_012450Imported
    OrganismiAiluropoda melanoleuca (Giant panda)
    Taxonomic identifieri9646 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaUrsidaeAiluropoda
    ProteomesiUP000008912: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: UniProtKB

    Family & Domainsi

    Sequence similaritiesi

    Contains fork-head DNA-binding domain.SAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00740000115067.
    HOGENOMiHOG000007545.
    KOiK09395.
    OMAiSLCHGGQ.
    OrthoDBiEOG7C8GHD.
    TreeFamiTF350628.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR001766. TF_fork_head.
    IPR018122. TF_fork_head_CS.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00250. Fork_head. 1 hit.
    [Graphical view]
    PRINTSiPR00053. FORKHEAD.
    SMARTiSM00339. FH. 1 hit.
    [Graphical view]
    PROSITEiPS00657. FORK_HEAD_1. 1 hit.
    PS00658. FORK_HEAD_2. 1 hit.
    PS50039. FORK_HEAD_3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    D2HLR1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPRPGRNTYS DQKPPYSYIS LTAMAIQSSP EKMLPLSEIY KFIMDRFPYY    50
    RENTQRWQNS LRHNLSFNDC FIKIPRRPDQ PGKGSFWALH PSCGDMFENG 100
    SFLRRRKRFK VLKSDHLAPS KPADAAQYLQ QQAKLRLSAL AASGTHLPQM 150
    PAAAYNLGGV AQPSGFKHPF AIENIIAREY KMPGGLAFSA MQPVPAAYPL 200
    PNQLTTMSSS LGTGWPHVYG SAGMIDSATP ISMASGDYSA YGVPLKPLCH 250
    AAGQTLPAIP VPIKPTPAAV PALPALPAPI PTLLSNSPPS LSPTSSQTAT 300
    SQSSPATPSE TLTSPASALH SVAVH 325
    Length:325
    Mass (Da):35,008
    Last modified:February 9, 2010 - v1
    Checksum:i0AEE1B02B196111D
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei325 – 3251Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ACTA01179549 Genomic DNA. No translation available.
    GL193015 Genomic DNA. Translation: EFB17903.1.
    RefSeqiXP_002923327.1. XM_002923281.1.

    Genome annotation databases

    EnsembliENSAMET00000021309; ENSAMEP00000020540; ENSAMEG00000019472.
    GeneIDi100475733.
    KEGGiaml:100475733.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ACTA01179549 Genomic DNA. No translation available.
    GL193015 Genomic DNA. Translation: EFB17903.1 .
    RefSeqi XP_002923327.1. XM_002923281.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSAMET00000021309 ; ENSAMEP00000020540 ; ENSAMEG00000019472 .
    GeneIDi 100475733.
    KEGGi aml:100475733.

    Phylogenomic databases

    GeneTreei ENSGT00740000115067.
    HOGENOMi HOG000007545.
    KOi K09395.
    OMAi SLCHGGQ.
    OrthoDBi EOG7C8GHD.
    TreeFami TF350628.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR001766. TF_fork_head.
    IPR018122. TF_fork_head_CS.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00250. Fork_head. 1 hit.
    [Graphical view ]
    PRINTSi PR00053. FORKHEAD.
    SMARTi SM00339. FH. 1 hit.
    [Graphical view ]
    PROSITEi PS00657. FORK_HEAD_1. 1 hit.
    PS00658. FORK_HEAD_2. 1 hit.
    PS50039. FORK_HEAD_3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The sequence and de novo assembly of the giant panda genome."
      Li R., Fan W., Tian G., Zhu H., He L., Cai J., Huang Q., Cai Q., Li B., Bai Y., Zhang Z., Zhang Y., Wang W., Li J., Wei F., Li H., Jian M., Li J.
      , Zhang Z., Nielsen R., Li D., Gu W., Yang Z., Xuan Z., Ryder O.A., Leung F.C., Zhou Y., Cao J., Sun X., Fu Y., Fang X., Guo X., Wang B., Hou R., Shen F., Mu B., Ni P., Lin R., Qian W., Wang G., Yu C., Nie W., Wang J., Wu Z., Liang H., Min J., Wu Q., Cheng S., Ruan J., Wang M., Shi Z., Wen M., Liu B., Ren X., Zheng H., Dong D., Cook K., Shan G., Zhang H., Kosiol C., Xie X., Lu Z., Zheng H., Li Y., Steiner C.C., Lam T.T., Lin S., Zhang Q., Li G., Tian J., Gong T., Liu H., Zhang D., Fang L., Ye C., Zhang J., Hu W., Xu A., Ren Y., Zhang G., Bruford M.W., Li Q., Ma L., Guo Y., An N., Hu Y., Zheng Y., Shi Y., Li Z., Liu Q., Chen Y., Zhao J., Qu N., Zhao S., Tian F., Wang X., Wang H., Xu L., Liu X., Vinar T., Wang Y., Lam T.W., Yiu S.M., Liu S., Zhang H., Li D., Huang Y., Wang X., Yang G., Jiang Z., Wang J., Qin N., Li L., Li J., Bolund L., Kristiansen K., Wong G.K., Olson M., Zhang X., Li S., Yang H., Wang J., Wang J.
      Nature 463:311-317(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiD2HLR1_AILME
    AccessioniPrimary (citable) accession number: D2HLR1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 9, 2010
    Last sequence update: February 9, 2010
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3