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D2HLR1

- D2HLR1_AILME

UniProt

D2HLR1 - D2HLR1_AILME

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Protein
Submitted name: Uncharacterized protein
Gene
LOC100475733, PANDA_012450
Organism
Ailuropoda melanoleuca (Giant panda)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. sequence-specific DNA binding Source: UniProtKB
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. axon target recognition Source: UniProtKB
  2. cell migration in diencephalon Source: UniProtKB
  3. epithelial cell differentiation involved in mammary gland alveolus development Source: UniProtKB
  4. floor plate development Source: UniProtKB
  5. hypothalamus cell migration Source: UniProtKB
  6. inferior colliculus development Source: UniProtKB
  7. lactation Source: UniProtKB
  8. mammary gland lobule development Source: UniProtKB
  9. mammillary body development Source: UniProtKB
  10. mammillothalamic axonal tract development Source: UniProtKB
  11. midbrain development Source: UniProtKB
  12. negative regulation of neuron apoptotic process Source: UniProtKB
  13. somitogenesis Source: UniProtKB
  14. spinal cord development Source: Ensembl
  15. telencephalon cell migration Source: UniProtKB
  16. thalamus development Source: Ensembl
  17. transcription, DNA-templated Source: UniProtKB-KW
  18. urogenital system development Source: Ensembl
  19. visual learning Source: UniProtKB
Complete GO annotation...

Keywords - Ligandi

DNA-bindingSAAS annotations

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:LOC100475733Imported
ORF Names:PANDA_012450Imported
OrganismiAiluropoda melanoleuca (Giant panda)
Taxonomic identifieri9646 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaUrsidaeAiluropoda
ProteomesiUP000008912: Unplaced

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB
Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliD2HLR1.

Family & Domainsi

Sequence similaritiesi

Contains fork-head DNA-binding domain.SAAS annotations

Phylogenomic databases

GeneTreeiENSGT00740000115067.
HOGENOMiHOG000007545.
KOiK09395.
OMAiSLCHGGQ.
OrthoDBiEOG7C8GHD.
TreeFamiTF350628.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR001766. TF_fork_head.
IPR018122. TF_fork_head_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00250. Fork_head. 1 hit.
[Graphical view]
PRINTSiPR00053. FORKHEAD.
SMARTiSM00339. FH. 1 hit.
[Graphical view]
PROSITEiPS00657. FORK_HEAD_1. 1 hit.
PS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D2HLR1-1 [UniParc]FASTAAdd to Basket

« Hide

MPRPGRNTYS DQKPPYSYIS LTAMAIQSSP EKMLPLSEIY KFIMDRFPYY    50
RENTQRWQNS LRHNLSFNDC FIKIPRRPDQ PGKGSFWALH PSCGDMFENG 100
SFLRRRKRFK VLKSDHLAPS KPADAAQYLQ QQAKLRLSAL AASGTHLPQM 150
PAAAYNLGGV AQPSGFKHPF AIENIIAREY KMPGGLAFSA MQPVPAAYPL 200
PNQLTTMSSS LGTGWPHVYG SAGMIDSATP ISMASGDYSA YGVPLKPLCH 250
AAGQTLPAIP VPIKPTPAAV PALPALPAPI PTLLSNSPPS LSPTSSQTAT 300
SQSSPATPSE TLTSPASALH SVAVH 325
Length:325
Mass (Da):35,008
Last modified:February 9, 2010 - v1
Checksum:i0AEE1B02B196111D
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei325 – 3251Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ACTA01179549 Genomic DNA. No translation available.
GL193015 Genomic DNA. Translation: EFB17903.1.
RefSeqiXP_002923327.1. XM_002923281.1.

Genome annotation databases

EnsembliENSAMET00000021309; ENSAMEP00000020540; ENSAMEG00000019472.
GeneIDi100475733.
KEGGiaml:100475733.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ACTA01179549 Genomic DNA. No translation available.
GL193015 Genomic DNA. Translation: EFB17903.1 .
RefSeqi XP_002923327.1. XM_002923281.1.

3D structure databases

ProteinModelPortali D2HLR1.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSAMET00000021309 ; ENSAMEP00000020540 ; ENSAMEG00000019472 .
GeneIDi 100475733.
KEGGi aml:100475733.

Phylogenomic databases

GeneTreei ENSGT00740000115067.
HOGENOMi HOG000007545.
KOi K09395.
OMAi SLCHGGQ.
OrthoDBi EOG7C8GHD.
TreeFami TF350628.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR001766. TF_fork_head.
IPR018122. TF_fork_head_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF00250. Fork_head. 1 hit.
[Graphical view ]
PRINTSi PR00053. FORKHEAD.
SMARTi SM00339. FH. 1 hit.
[Graphical view ]
PROSITEi PS00657. FORK_HEAD_1. 1 hit.
PS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence and de novo assembly of the giant panda genome."
    Li R., Fan W., Tian G., Zhu H., He L., Cai J., Huang Q., Cai Q., Li B., Bai Y., Zhang Z., Zhang Y., Wang W., Li J., Wei F., Li H., Jian M., Li J.
    , Zhang Z., Nielsen R., Li D., Gu W., Yang Z., Xuan Z., Ryder O.A., Leung F.C., Zhou Y., Cao J., Sun X., Fu Y., Fang X., Guo X., Wang B., Hou R., Shen F., Mu B., Ni P., Lin R., Qian W., Wang G., Yu C., Nie W., Wang J., Wu Z., Liang H., Min J., Wu Q., Cheng S., Ruan J., Wang M., Shi Z., Wen M., Liu B., Ren X., Zheng H., Dong D., Cook K., Shan G., Zhang H., Kosiol C., Xie X., Lu Z., Zheng H., Li Y., Steiner C.C., Lam T.T., Lin S., Zhang Q., Li G., Tian J., Gong T., Liu H., Zhang D., Fang L., Ye C., Zhang J., Hu W., Xu A., Ren Y., Zhang G., Bruford M.W., Li Q., Ma L., Guo Y., An N., Hu Y., Zheng Y., Shi Y., Li Z., Liu Q., Chen Y., Zhao J., Qu N., Zhao S., Tian F., Wang X., Wang H., Xu L., Liu X., Vinar T., Wang Y., Lam T.W., Yiu S.M., Liu S., Zhang H., Li D., Huang Y., Wang X., Yang G., Jiang Z., Wang J., Qin N., Li L., Li J., Bolund L., Kristiansen K., Wong G.K., Olson M., Zhang X., Li S., Yang H., Wang J., Wang J.
    Nature 463:311-317(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (SEP-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiD2HLR1_AILME
AccessioniPrimary (citable) accession number: D2HLR1
Entry historyi
Integrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: July 9, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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