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D2GVH4

- D2GVH4_AILME

UniProt

D2GVH4 - D2GVH4_AILME

Protein
Submitted name:

Uncharacterized protein

Gene

LOC100481969

Organism
Ailuropoda melanoleuca (Giant panda)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (09 Feb 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. RNA polymerase II core promoter proximal region sequence-specific DNA binding Source: Ensembl
    2. sequence-specific DNA binding transcription factor activity Source: Ensembl

    GO - Biological processi

    1. apoptotic process Source: Ensembl
    2. CD8-positive, alpha-beta T cell differentiation Source: Ensembl
    3. cell cycle arrest Source: Ensembl
    4. cellular response to interferon-beta Source: Ensembl
    5. cellular response to mechanical stimulus Source: Ensembl
    6. defense response to virus Source: Ensembl
    7. interferon-gamma-mediated signaling pathway Source: Ensembl
    8. negative regulation of regulatory T cell differentiation Source: Ensembl
    9. positive regulation of interferon-beta production Source: Ensembl
    10. positive regulation of interleukin-12 biosynthetic process Source: Ensembl
    11. positive regulation of transcription from RNA polymerase II promoter Source: Ensembl
    12. regulation of CD8-positive, alpha-beta T cell proliferation Source: Ensembl
    13. regulation of MyD88-dependent toll-like receptor signaling pathway Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:LOC100481969Imported
    ORF Names:PANDA_000726Imported
    OrganismiAiluropoda melanoleuca (Giant panda)
    Taxonomic identifieri9646 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaUrsidaeAiluropoda
    ProteomesiUP000008912: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. nuclear chromatin Source: Ensembl

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00740000114956.
    HOGENOMiHOG000037937.
    KOiK09444.
    OMAiCKEEPEV.
    OrthoDBiEOG72ZCFD.
    TreeFamiTF328512.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR017431. Interferon_reg_fac-1/2.
    IPR019817. Interferon_reg_fac_CS.
    IPR001346. Interferon_reg_fact_DNA-bd_dom.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00605. IRF. 1 hit.
    [Graphical view]
    PIRSFiPIRSF038196. IFN_RF1/2. 1 hit.
    PRINTSiPR00267. INTFRNREGFCT.
    SMARTiSM00348. IRF. 1 hit.
    [Graphical view]
    PROSITEiPS00601. IRF_1. 1 hit.
    PS51507. IRF_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    D2GVH4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPITRMRMRP WLEMQINSNQ IPGLIWINKE EMIFQIPWKH AAKHGWDINK    50
    DACLFRSWAI HTGRYKAGEK EPDPKTWKAN FRCAMNSLPD IEEVKDQSRN 100
    KGSSAVRVYR MLPPLTKNQR KERKSKSSRD AKSKAKRKSC GDSSPDTFSD 150
    GLSSSTLPDD HSSYTAQGYV GQDLEVERDL TPALSPCAVT STLPDWRIPV 200
    EIVPDSTSDL YNFQVSPMPS TSEATTDEDE EGKLTEDIMK LLEQTGWQPT 250
    NVDGKGYLLN EPGAQPTSLY GDFSCKEEPE VDSPGGYIGL ISSDLKNMDT 300
    SWLDSLLPPV RLPSIQAIPC AP 322
    Length:322
    Mass (Da):36,083
    Last modified:February 9, 2010 - v1
    Checksum:i5B08905637ACC6A4
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei322 – 3221Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ACTA01008157 Genomic DNA. No translation available.
    GL192350 Genomic DNA. Translation: EFB24253.1.
    RefSeqiXP_002912943.1. XM_002912897.1.

    Genome annotation databases

    EnsembliENSAMET00000019449; ENSAMEP00000018700; ENSAMEG00000017694.
    GeneIDi100481969.
    KEGGiaml:100481969.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ACTA01008157 Genomic DNA. No translation available.
    GL192350 Genomic DNA. Translation: EFB24253.1 .
    RefSeqi XP_002912943.1. XM_002912897.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSAMET00000019449 ; ENSAMEP00000018700 ; ENSAMEG00000017694 .
    GeneIDi 100481969.
    KEGGi aml:100481969.

    Phylogenomic databases

    GeneTreei ENSGT00740000114956.
    HOGENOMi HOG000037937.
    KOi K09444.
    OMAi CKEEPEV.
    OrthoDBi EOG72ZCFD.
    TreeFami TF328512.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR017431. Interferon_reg_fac-1/2.
    IPR019817. Interferon_reg_fac_CS.
    IPR001346. Interferon_reg_fact_DNA-bd_dom.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00605. IRF. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF038196. IFN_RF1/2. 1 hit.
    PRINTSi PR00267. INTFRNREGFCT.
    SMARTi SM00348. IRF. 1 hit.
    [Graphical view ]
    PROSITEi PS00601. IRF_1. 1 hit.
    PS51507. IRF_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The sequence and de novo assembly of the giant panda genome."
      Li R., Fan W., Tian G., Zhu H., He L., Cai J., Huang Q., Cai Q., Li B., Bai Y., Zhang Z., Zhang Y., Wang W., Li J., Wei F., Li H., Jian M., Li J.
      , Zhang Z., Nielsen R., Li D., Gu W., Yang Z., Xuan Z., Ryder O.A., Leung F.C., Zhou Y., Cao J., Sun X., Fu Y., Fang X., Guo X., Wang B., Hou R., Shen F., Mu B., Ni P., Lin R., Qian W., Wang G., Yu C., Nie W., Wang J., Wu Z., Liang H., Min J., Wu Q., Cheng S., Ruan J., Wang M., Shi Z., Wen M., Liu B., Ren X., Zheng H., Dong D., Cook K., Shan G., Zhang H., Kosiol C., Xie X., Lu Z., Zheng H., Li Y., Steiner C.C., Lam T.T., Lin S., Zhang Q., Li G., Tian J., Gong T., Liu H., Zhang D., Fang L., Ye C., Zhang J., Hu W., Xu A., Ren Y., Zhang G., Bruford M.W., Li Q., Ma L., Guo Y., An N., Hu Y., Zheng Y., Shi Y., Li Z., Liu Q., Chen Y., Zhao J., Qu N., Zhao S., Tian F., Wang X., Wang H., Xu L., Liu X., Vinar T., Wang Y., Lam T.W., Yiu S.M., Liu S., Zhang H., Li D., Huang Y., Wang X., Yang G., Jiang Z., Wang J., Qin N., Li L., Li J., Bolund L., Kristiansen K., Wong G.K., Olson M., Zhang X., Li S., Yang H., Wang J., Wang J.
      Nature 463:311-317(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Ensembl
      Submitted (SEP-2011) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiD2GVH4_AILME
    AccessioniPrimary (citable) accession number: D2GVH4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 9, 2010
    Last sequence update: February 9, 2010
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3