D2GVH4 (D2GVH4_AILME) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein Ensembl ENSAMEP00000018700

Gene names

Name:	IRF1 Ensembl ENSAMEP00000018700
ORF Names:	PANDA_000726 EMBL EFB24253.1

Organism

Ailuropoda melanoleuca (Giant panda) [Reference proteome]

Taxonomic identifier

9646 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Laurasiatheria › Carnivora › Caniformia › Ursidae › Ailuropoda

Protein attributes

Sequence length	322 AA.
Sequence status	Fragment.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	CD8-positive, alpha-beta T cell differentiation Inferred from electronic annotation. Source: Compara cell cycle arrest Inferred from electronic annotation. Source: Compara cellular response to mechanical stimulus Inferred from electronic annotation. Source: Compara defense response to virus Inferred from electronic annotation. Source: Compara induction of apoptosis Inferred from electronic annotation. Source: Compara interferon-gamma-mediated signaling pathway Inferred from electronic annotation. Source: Compara negative regulation of regulatory T cell differentiation Inferred from electronic annotation. Source: Compara positive regulation of interferon-beta production Inferred from electronic annotation. Source: Compara positive regulation of interleukin-12 biosynthetic process Inferred from electronic annotation. Source: Compara positive regulation of transcription from RNA polymerase II promoter Inferred from electronic annotation. Source: Compara protein acetylation Inferred from electronic annotation. Source: Compara protein phosphorylation Inferred from electronic annotation. Source: Compara regulation of CD8-positive, alpha-beta T cell proliferation Inferred from electronic annotation. Source: Compara regulation of MyD88-dependent toll-like receptor signaling pathway Inferred from electronic annotation. Source: Compara
Cellular_component	cytoplasm Inferred from electronic annotation. Source: Compara
Molecular_function	regulatory region DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding Inferred from electronic annotation. Source: Compara sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	322	1	EMBL EFB24253.1

Sequences

	Sequence		Length	Mass (Da)
	D2GVH4 [UniParc]. Last modified February 9, 2010. Version 1. Checksum: 5B08905637ACC6A4	FASTA	322	36,083
	10 20 30 40 50 60 MPITRMRMRP WLEMQINSNQ IPGLIWINKE EMIFQIPWKH AAKHGWDINK DACLFRSWAI 70 80 90 100 110 120 HTGRYKAGEK EPDPKTWKAN FRCAMNSLPD IEEVKDQSRN KGSSAVRVYR MLPPLTKNQR 130 140 150 160 170 180 KERKSKSSRD AKSKAKRKSC GDSSPDTFSD GLSSSTLPDD HSSYTAQGYV GQDLEVERDL 190 200 210 220 230 240 TPALSPCAVT STLPDWRIPV EIVPDSTSDL YNFQVSPMPS TSEATTDEDE EGKLTEDIMK 250 260 270 280 290 300 LLEQTGWQPT NVDGKGYLLN EPGAQPTSLY GDFSCKEEPE VDSPGGYIGL ISSDLKNMDT 310 320 SWLDSLLPPV RLPSIQAIPC AP

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The sequence and de novo assembly of the giant panda genome." Li R., Fan W., Tian G., Zhu H., He L., Cai J., Huang Q., Cai Q., Li B., Bai Y., Zhang Z., Zhang Y., Wang W., Li J., Wei F., Li H., Jian M., Li J. , Zhang Z., Nielsen R., Li D., Gu W., Yang Z., Xuan Z., Ryder O.A., Leung F.C., Zhou Y., Cao J., Sun X., Fu Y., Fang X., Guo X., Wang B., Hou R., Shen F., Mu B., Ni P., Lin R., Qian W., Wang G., Yu C., Nie W., Wang J., Wu Z., Liang H., Min J., Wu Q., Cheng S., Ruan J., Wang M., Shi Z., Wen M., Liu B., Ren X., Zheng H., Dong D., Cook K., Shan G., Zhang H., Kosiol C., Xie X., Lu Z., Zheng H., Li Y., Steiner C.C., Lam T.T., Lin S., Zhang Q., Li G., Tian J., Gong T., Liu H., Zhang D., Fang L., Ye C., Zhang J., Hu W., Xu A., Ren Y., Zhang G., Bruford M.W., Li Q., Ma L., Guo Y., An N., Hu Y., Zheng Y., Shi Y., Li Z., Liu Q., Chen Y., Zhao J., Qu N., Zhao S., Tian F., Wang X., Wang H., Xu L., Liu X., Vinar T., Wang Y., Lam T.W., Yiu S.M., Liu S., Zhang H., Li D., Huang Y., Wang X., Yang G., Jiang Z., Wang J., Qin N., Li L., Li J., Bolund L., Kristiansen K., Wong G.K., Olson M., Zhang X., Li S., Yang H., Wang J., Wang J. Nature 463:311-317(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	Ensembl Submitted (SEP-2011) to UniProtKB Cited for: IDENTIFICATION.

Cross-references

Sequence databases
EMBL GenBank DDBJ	ACTA01008157 Genomic DNA. No translation available. GL192350 Genomic DNA. Translation: EFB24253.1.
RefSeq	XP_002912943.1. XM_002912897.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSAMET00000019449; ENSAMEP00000018700; ENSAMEG00000017694.
GeneID	100481969.
KEGG	aml:100481969.
Phylogenomic databases
GeneTree	ENSGT00670000097650.
HOGENOM	HOG000037937.
KO	K09444.
OMA	CKEEPEV.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR017431. Interferon_reg_fac-1/2. IPR019817. Interferon_reg_fac_CS. IPR001346. Interferon_reg_fact_DNA-bd_dom. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00605. IRF. 1 hit. [Graphical view]
PIRSF	PIRSF038196. IFN_RF1/2. 1 hit.
PRINTS	PR00267. INTFRNREGFCT.
SMART	SM00348. IRF. 1 hit. [Graphical view]
PROSITE	PS00601. IRF_1. 1 hit. PS51507. IRF_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2GVH4_AILME

Accession

Primary (citable) accession number: D2GVH4

Entry history

Integrated into UniProtKB/TrEMBL:	February 9, 2010
Last sequence update:	February 9, 2010
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)