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D2C3U9 (D2C3U9_THENR) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
30S ribosomal protein S17 RuleBase RU003873 HAMAP-Rule MF_01345
Gene names
Name:rpsQ HAMAP-Rule MF_01345
Ordered Locus Names:Tnap_1318
OrganismThermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) [Complete proteome] [HAMAP] EMBL ADA67403.1
Taxonomic identifier590168 [NCBI]
Taxonomic lineageBacteria › Thermotogae › Thermotogales › Thermotogaceae › Thermotoga ›

Protein attributes

Sequence length107 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal By similarity. RuleBase RU003873

One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA By similarity. SAAS SAAS019979 HAMAP-Rule MF_01345

Subunit structure

Part of the 30S ribosomal subunit By similarity. SAAS SAAS019979 HAMAP-Rule MF_01345

Sequence similarities

Belongs to the ribosomal protein S17P family. RuleBase RU003872 HAMAP-Rule MF_01345

Sequences

Sequence LengthMass (Da)Tools
D2C3U9 [UniParc].

Last modified February 9, 2010. Version 1.
Checksum: 28C19B663CA35A5C

FASTA10712,613
        10         20         30         40         50         60 
MPRKRLTGIV VSDKMDKTVV VAVEKLVQHP IYKKYVKRTK KYHAHDERNE CKIGDVVEIE 

        70         80         90        100 
ETRPLSKTKR WRVVRIIQRF EPERVLKEEE DIQEEIEAVE GKGGVES

« Hide

References

[1]"Complete sequence of Thermotoga petrophila RKU-1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Nelson K.E., Gogarten J.P., Noll K.M.
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001839 Genomic DNA. Translation: ADA67403.1.
RefSeqYP_003346817.1. NC_013642.1.

3D structure databases

ProteinModelPortalD2C3U9.
SMRD2C3U9. Positions 4-79.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADA67403; ADA67403; Tnap_1318.
GeneID8675479.
KEGGtnp:Tnap_1318.
PATRIC32522484. VBITheNap72244_1342.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000231339.
KOK02961.
OMATIRECRP.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
HAMAPMF_01345_B. Ribosomal_S17_B.
InterProIPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17.
IPR019984. Ribosomal_S17_bac-type.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERPTHR10744. PTHR10744. 1 hit.
PfamPF00366. Ribosomal_S17. 1 hit.
[Graphical view]
PRINTSPR00973. RIBOSOMALS17.
ProDomPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR03635. S17_bact. 1 hit.
PROSITEPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD2C3U9_THENR
AccessionPrimary (citable) accession number: D2C3U9
Entry history
Integrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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