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Protein

Superoxide dismutase

Gene

Dd586_0065

Organism
Dickeya zeae (strain Ech586) (Dickeya dadantii (strain Ech586))
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi27Divalent metal cationUniRule annotation1
Metal bindingi82Divalent metal cationUniRule annotation1
Metal bindingi169Divalent metal cationUniRule annotation1
Metal bindingi173Divalent metal cationUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionOxidoreductaseUniRule annotationImported
LigandMetal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciDDAD590409:GHDW-65-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:Dd586_0065Imported
OrganismiDickeya zeae (strain Ech586) (Dickeya dadantii (strain Ech586))Imported
Taxonomic identifieri590409 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaeDickeya
Proteomesi
  • UP000001446 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi590409.Dd586_0065.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 89Sod_Fe_NInterPro annotationAdd BLAST88
Domaini96 – 202Sod_Fe_CInterPro annotationAdd BLAST107

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CK4. Bacteria.
COG0605. LUCA.
HOGENOMiHOG000013583.
KOiK04564.
OMAiDSPLMHG.
OrthoDBiPOG091H03Q7.

Family and domain databases

InterProiView protein in InterPro
IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
PfamiView protein in Pfam
PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiView protein in PROSITE
PS00088. SOD_MN. 1 hit.

Sequencei

Sequence statusi: Complete.

D2C0M0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYSLPSLPY AYDALEPHFD AQTMEIHHSK HHQAYVNNAN AALESLPEFA
60 70 80 90 100
SLSAEELITK LDQLPADKKG PLRNNAGGHA NHSLFWKGLK LGTTLEGELK
110 120 130 140 150
AAIERDFGSV DEFKTKFEQA AATRFGSGWA WLVLKDDGKL AVVSTANQDS
160 170 180 190 200
PLMGEAISGA SGYPLIALDV WEHAYYLKYQ NRRPDYIKAF WSVVNWDEAA

KRFAEAKK
Length:208
Mass (Da):23,173
Last modified:February 9, 2010 - v1
Checksum:i2E7E4660FFA4D7EF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001836 Genomic DNA. Translation: ACZ74963.1.
RefSeqiWP_012882816.1. NC_013592.1.

Genome annotation databases

EnsemblBacteriaiACZ74963; ACZ74963; Dd586_0065.
KEGGiddc:Dd586_0065.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001836 Genomic DNA. Translation: ACZ74963.1.
RefSeqiWP_012882816.1. NC_013592.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi590409.Dd586_0065.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACZ74963; ACZ74963; Dd586_0065.
KEGGiddc:Dd586_0065.

Phylogenomic databases

eggNOGiENOG4105CK4. Bacteria.
COG0605. LUCA.
HOGENOMiHOG000013583.
KOiK04564.
OMAiDSPLMHG.
OrthoDBiPOG091H03Q7.

Enzyme and pathway databases

BioCyciDDAD590409:GHDW-65-MONOMER.

Family and domain databases

InterProiView protein in InterPro
IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
PfamiView protein in Pfam
PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiView protein in PROSITE
PS00088. SOD_MN. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD2C0M0_DICZ5
AccessioniPrimary (citable) accession number: D2C0M0
Entry historyiIntegrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: June 7, 2017
This is version 42 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.