Dd586_2097

Protein namesⁱ	Submitted name: Rhamnogalacturonate lyaseImported
Gene namesⁱ	Ordered Locus Names:Dd586_2097Imported
Organismⁱ	Dickeya zeae (strain Ech586) (Dickeya dadantii (strain Ech586))Imported
Taxonomic identifierⁱ	590409 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Pectobacteriaceae › Dickeya › Dickeya zeae
Proteomesⁱ	UP000001446 Componentⁱ: Chromosome

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Signal peptideⁱ	1 – 20	Sequence analysisAdd BLAST		20
ChainⁱPRO_5003029902	21 – 570	Sequence analysisAdd BLAST		550

Interactionⁱ

Protein-protein interaction databases

STRINGⁱ	590409.Dd586_2097.

STRINGⁱ

590409.Dd586_2097.

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Domainⁱ	341 – 396	fn3_3InterPro annotationAdd BLAST		56
Domainⁱ	413 – 568	CBM-likeInterPro annotationAdd BLAST		156

Keywords - Domainⁱ

SignalSequence analysis

Phylogenomic databases

HOGENOMⁱ	HOG000142194.
KEGG Orthology (KO) More...KOⁱ	K18195.
OMAⁱ	KIQDETW.
Database of Orthologous Groups More...OrthoDBⁱ	POG091H1HV2.

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd10316. RGL4_M. 1 hit.
InterProⁱ	View protein in InterPro IPR013784. Carb-bd-like_fold. IPR011013. Gal_mutarotase_sf_dom. IPR008979. Galactose-bd-like_sf. IPR029413. RG-lyase_II. IPR029411. RG-lyase_III. IPR010325. Rhamnogal_lyase.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF14683. CBM-like. 1 hit. PF14686. fn3_3. 1 hit. PF06045. Rhamnogal_lyase. 1 hit.
SUPFAMⁱ	SSF49452. SSF49452. 1 hit. SSF49785. SSF49785. 1 hit. SSF74650. SSF74650. 1 hit.

Sequenceⁱ

Sequence statusⁱ: Complete.

D2C043-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MQSRKMLIAI SILGSSLAQA ASPSDVSVGL SGMKAQIDNG LVSVAIGSDG 
        60         70         80         90        100
SIGTLSNGSQ NLIDKANSQV NALGKSSTGY LDYYSGAFLK FKPQQISVIE 
       110        120        130        140        150
NTKDIVHIAY IDNETSALSL EYHFIVRRGV SGIYSYAVAR NDTSSNLTVS 
       160        170        180        190        200
ELRGVYRFNP FLLDHISNGI HTTKPYLYSQ LNNFEKIQDE TWKLPDGSYY 
       210        220        230        240        250
SKYDFAGYMR KTPVWGVYGN NIGAWIVPGS TEYMSGDDTK QDLMVHQDGL 
       260        270        280        290        300
AIMYMTGSHF GTPDLIAPPG WQKLYGPWLL YVNAGTDEQM YSDALARSLQ 
       310        320        330        340        350
EIASWPYNWV NDSRFSVDRA SVTGSVNTTV PLNVTLSSSL NEASDVQTLG 
       360        370        380        390        400
YAFTTNTDSQ GNFRFDKVRK GKYTLTIYAN GGSRPGVLYS DVVNVTGNTP 
       410        420        430        440        450
IPAIQLAQAA PVVWAIGQSD RLASEFRFGD QLRNYHWQND VPANLTYTIG 
       460        470        480        490        500
ESSPAQDWYY AQTNPGSWNV NYIDRADGSS RVLNVAFAAA SNRGMTNPTT 
       510        520        530        540        550
PSLSVLVNGT KVKDIQYDND KSVYRGALNS GKYHYERIPI DSGLLRDGTN 
       560        570
TITFTLNGGT FMYDAVTLTK

Length:570

Mass (Da):62,557

Last modified:February 9, 2010 - v1

Checksum:ⁱ24553A479F9CD504

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	CP001836 Genomic DNA. Translation: ACZ76952.1.
NCBI Reference Sequences More...RefSeqⁱ	WP_012884769.1. NC_013592.1.

Genome annotation databases

EnsemblBacteriaⁱ	ACZ76952; ACZ76952; Dd586_2097.
GeneIDⁱ	33924753.
KEGGⁱ	ddc:Dd586_2097.

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
D2C043	C6CIE9 UPI0002FA1D14 UPI0003815C2A UPI00039E91E2 UPI0003A5F11D UPI000532C717 A0A0A8FBV4 UPI0003A11001 UPI000C9D2043 UPI000CD48C6F +3	Dickeya chrysanthemi (strain Ech1591) (Dickeya zeae (strain Ech1591)) Dickeya chrysanthemi (Pectobacterium chrysanthemi) (Erwinia chrysanthemi) Dickeya zeae Dickeya zeae EC1 Dickeya dianthicola Dickeya dianthicola RNS04.9	570	UniRef90_D2C043	Cluster: Rhamnogalacturonate lyase	14

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
D2C043	Q6D915 UPI0002D975E8 A0A093S7F4 UPI0006895CD1 A0A1M5JSQ2 UPI0006509998 A0A086F0Y8 UPI00068E58D2 A0A093UVE2 UPI00068A04CE +78	Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica) Pectobacterium atrosepticum (Erwinia carotovora subsp. atroseptica) Pectobacterium betavasculorum Pectobacterium carotovorum (Erwinia carotovora) Pectobacterium carotovorum subsp. brasiliense Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora subsp. carotovora) Pectobacterium carotovorum subsp. odoriferum Pectobacterium carotovorum subsp. carotovorum (strain PC1) Pectobacterium carotovorum subsp. carotovorum PCC21 Pectobacterium parmentieri (strain WPP163) (Pectobacterium wasabiae (strain WPP163)) And more	576	UniRef50_Q6D915	Cluster: Rhamnogalacturonate lyase	89

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	CP001836 Genomic DNA. Translation: ACZ76952.1.
NCBI Reference Sequences More...RefSeqⁱ	WP_012884769.1. NC_013592.1.

3D structure databases

ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	590409.Dd586_2097.

STRINGⁱ

590409.Dd586_2097.

Protein family/group databases

Carbohydrate-Active enZymes More...CAZyⁱ	PL4. Polysaccharide Lyase Family 4.

CAZyⁱ

PL4. Polysaccharide Lyase Family 4.

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

EnsemblBacteriaⁱ	ACZ76952; ACZ76952; Dd586_2097.
GeneIDⁱ	33924753.
KEGGⁱ	ddc:Dd586_2097.

Phylogenomic databases

HOGENOMⁱ	HOG000142194.
KEGG Orthology (KO) More...KOⁱ	K18195.
OMAⁱ	KIQDETW.
Database of Orthologous Groups More...OrthoDBⁱ	POG091H1HV2.

Enzyme and pathway databases

BioCycⁱ	DDAD590409:G1GGV-2123-MONOMER.

BioCycⁱ

DDAD590409:G1GGV-2123-MONOMER.

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd10316. RGL4_M. 1 hit.
InterProⁱ	View protein in InterPro IPR013784. Carb-bd-like_fold. IPR011013. Gal_mutarotase_sf_dom. IPR008979. Galactose-bd-like_sf. IPR029413. RG-lyase_II. IPR029411. RG-lyase_III. IPR010325. Rhamnogal_lyase.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF14683. CBM-like. 1 hit. PF14686. fn3_3. 1 hit. PF06045. Rhamnogal_lyase. 1 hit.
SUPFAMⁱ	SSF49452. SSF49452. 1 hit. SSF49785. SSF49785. 1 hit. SSF74650. SSF74650. 1 hit.
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	D2C043_DICZ5
Accessionⁱ	D2C043Primary (citable) accession number: D2C043
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	February 9, 2010
	Last sequence update:	February 9, 2010
	Last modified:	February 28, 2018
	This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteomeImported

UniProtKB - D2C043 (D2C043_DICZ5)

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Rhamnogalacturonate lyase

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Keywordsⁱ

Enzyme and pathway databases

Protein family/group databases

Names & Taxonomyⁱ

PTM / Processingⁱ

Molecule processing

Interactionⁱ

Protein-protein interaction databases

Family & Domainsⁱ

Domains and Repeats

Keywords - Domainⁱ

Phylogenomic databases

Family and domain databases

Sequenceⁱ

Sequence databases

Genome annotation databases

Similar proteinsⁱ

Cross-referencesⁱ

Sequence databases

3D structure databases

Protein-protein interaction databases

Protein family/group databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - D2C043 (D2C043_DICZ5)

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Rhamnogalacturonate lyase

Dd586_2097

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<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Enzyme and pathway databases

Protein family/group databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Protein family/group databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

PTM / Processingⁱ

Interactionⁱ

Family & Domainsⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ