Dd586_2097

Functionⁱ

GO - Molecular functionⁱ

carbohydrate binding Source: InterPro
lyase activity Source: UniProtKB-KW

GO - Biological processⁱ

carbohydrate metabolic process Source: InterPro

Complete GO annotation...

Keywords - Molecular functionⁱ

LyaseImported

Enzyme and pathway databases

BioCycⁱ	DDAD590409:GHDW-2143-MONOMER.

BioCycⁱ

DDAD590409:GHDW-2143-MONOMER.

Protein family/group databases

CAZyⁱ	PL4. Polysaccharide Lyase Family 4.

CAZyⁱ

PL4. Polysaccharide Lyase Family 4.

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: Rhamnogalacturonate lyaseImported Automatic assertion inferred from database entriesⁱ EMBL:ACZ76952.1
Gene namesⁱ	Ordered Locus Names:Dd586_2097Imported Automatic assertion inferred from database entriesⁱ EMBL:ACZ76952.1
Organismⁱ	Dickeya dadantii (strain Ech586)Imported Automatic assertion inferred from database entriesⁱ EMBL:ACZ76952.1 Proteomes:UP000001446
Taxonomic identifierⁱ	590409 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Dickeya › Dickeya zeae
Proteomesⁱ	UP000001446 Componentⁱ: Chromosome

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	Length	Description	Graphical view	Feature identifier	Actions
Signal peptideⁱ	1 – 20	20	Sequence analysis Automatic assertion according to rulesⁱ SAM:SignalP			Add BLAST
Chainⁱ	21 – 570	550	Sequence analysis Automatic assertion according to rulesⁱ SAM:SignalP		PRO_5003029902	Add BLAST

Interactionⁱ

Protein-protein interaction databases

STRINGⁱ	590409.Dd586_2097.

STRINGⁱ

590409.Dd586_2097.

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	Length	Description	Graphical view	Feature identifier	Actions
Domainⁱ	340 – 396	57	fn3_3InterPro annotation Automatic assertion inferred from signature matchⁱ Pfam:PF14686			Add BLAST
Domainⁱ	413 – 568	156	CBM-likeInterPro annotation Automatic assertion inferred from signature matchⁱ Pfam:PF14683			Add BLAST

Keywords - Domainⁱ

SignalSequence analysis

Phylogenomic databases

HOGENOMⁱ	HOG000142194.
KOⁱ	K18195.
OMAⁱ	GWISENP.
OrthoDBⁱ	POG091H1HV2.

Family and domain databases

CDDⁱ	cd10316. RGL4_M. 1 hit.
Gene3Dⁱ	2.60.120.260. 1 hit. 2.60.40.1120. 1 hit.
InterProⁱ	IPR013784. Carb-bd-like_fold. IPR014766. CarboxyPept_regulatory_dom. IPR011013. Gal_mutarotase_SF_dom. IPR008979. Galactose-bd-like. IPR029413. RG-lyase_II. IPR029411. RG-lyase_III. IPR010325. Rhamnogal_lyase. [Graphical view]
Pfamⁱ	PF14683. CBM-like. 1 hit. PF14686. fn3_3. 1 hit. PF06045. Rhamnogal_lyase. 1 hit. [Graphical view]
SUPFAMⁱ	SSF49452. SSF49452. 1 hit. SSF49785. SSF49785. 1 hit. SSF74650. SSF74650. 1 hit.

Sequenceⁱ

Sequence statusⁱ: Complete.

D2C043-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MQSRKMLIAI SILGSSLAQA ASPSDVSVGL SGMKAQIDNG LVSVAIGSDG 
        60         70         80         90        100
SIGTLSNGSQ NLIDKANSQV NALGKSSTGY LDYYSGAFLK FKPQQISVIE 
       110        120        130        140        150
NTKDIVHIAY IDNETSALSL EYHFIVRRGV SGIYSYAVAR NDTSSNLTVS 
       160        170        180        190        200
ELRGVYRFNP FLLDHISNGI HTTKPYLYSQ LNNFEKIQDE TWKLPDGSYY 
       210        220        230        240        250
SKYDFAGYMR KTPVWGVYGN NIGAWIVPGS TEYMSGDDTK QDLMVHQDGL 
       260        270        280        290        300
AIMYMTGSHF GTPDLIAPPG WQKLYGPWLL YVNAGTDEQM YSDALARSLQ 
       310        320        330        340        350
EIASWPYNWV NDSRFSVDRA SVTGSVNTTV PLNVTLSSSL NEASDVQTLG 
       360        370        380        390        400
YAFTTNTDSQ GNFRFDKVRK GKYTLTIYAN GGSRPGVLYS DVVNVTGNTP 
       410        420        430        440        450
IPAIQLAQAA PVVWAIGQSD RLASEFRFGD QLRNYHWQND VPANLTYTIG 
       460        470        480        490        500
ESSPAQDWYY AQTNPGSWNV NYIDRADGSS RVLNVAFAAA SNRGMTNPTT 
       510        520        530        540        550
PSLSVLVNGT KVKDIQYDND KSVYRGALNS GKYHYERIPI DSGLLRDGTN 
       560        570
TITFTLNGGT FMYDAVTLTK

Length:570

Mass (Da):62,557

Last modified:February 9, 2010 - v1

Checksum:ⁱ24553A479F9CD504

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	CP001836 Genomic DNA. Translation: ACZ76952.1.
RefSeqⁱ	WP_012884769.1. NC_013592.1.

Genome annotation databases

EnsemblBacteriaⁱ	ACZ76952; ACZ76952; Dd586_2097.
KEGGⁱ	ddc:Dd586_2097.
PATRICⁱ	32070917. VBIDicDad110536_2109.

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	CP001836 Genomic DNA. Translation: ACZ76952.1.
RefSeqⁱ	WP_012884769.1. NC_013592.1.

3D structure databases

ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	590409.Dd586_2097.

STRINGⁱ

590409.Dd586_2097.

Protein family/group databases

CAZyⁱ	PL4. Polysaccharide Lyase Family 4.

CAZyⁱ

PL4. Polysaccharide Lyase Family 4.

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

EnsemblBacteriaⁱ	ACZ76952; ACZ76952; Dd586_2097.
KEGGⁱ	ddc:Dd586_2097.
PATRICⁱ	32070917. VBIDicDad110536_2109.

Phylogenomic databases

HOGENOMⁱ	HOG000142194.
KOⁱ	K18195.
OMAⁱ	GWISENP.
OrthoDBⁱ	POG091H1HV2.

Enzyme and pathway databases

BioCycⁱ	DDAD590409:GHDW-2143-MONOMER.

BioCycⁱ

DDAD590409:GHDW-2143-MONOMER.

Family and domain databases

CDDⁱ	cd10316. RGL4_M. 1 hit.
Gene3Dⁱ	2.60.120.260. 1 hit. 2.60.40.1120. 1 hit.
InterProⁱ	IPR013784. Carb-bd-like_fold. IPR014766. CarboxyPept_regulatory_dom. IPR011013. Gal_mutarotase_SF_dom. IPR008979. Galactose-bd-like. IPR029413. RG-lyase_II. IPR029411. RG-lyase_III. IPR010325. Rhamnogal_lyase. [Graphical view]
Pfamⁱ	PF14683. CBM-like. 1 hit. PF14686. fn3_3. 1 hit. PF06045. Rhamnogal_lyase. 1 hit. [Graphical view]
SUPFAMⁱ	SSF49452. SSF49452. 1 hit. SSF49785. SSF49785. 1 hit. SSF74650. SSF74650. 1 hit.
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ

D2C043_DICD5

Accessionⁱ

Primary (citable) accession number: D2C043

Entry historyⁱ

Integrated into UniProtKB/TrEMBL:	February 9, 2010
Last sequence update:	February 9, 2010
Last modified:	September 7, 2016
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry statusⁱ

Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteomeImported

Similar proteinsⁱ

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:

100%	UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%	UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%	UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

UniProtKB - D2C043 (D2C043_DICD5)

UniProt

D2C043 - D2C043_DICD5

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Rhamnogalacturonate lyase

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Keywords - Molecular functionⁱ

Enzyme and pathway databases

Protein family/group databases

Names & Taxonomyⁱ

PTM / Processingⁱ

Molecule processing

Interactionⁱ

Protein-protein interaction databases

Family & Domainsⁱ

Domains and Repeats

Keywords - Domainⁱ

Phylogenomic databases

Family and domain databases

Sequenceⁱ

Sequence databases

Genome annotation databases

Cross-referencesⁱ

Sequence databases

3D structure databases

Protein-protein interaction databases

Protein family/group databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ

Similar proteinsⁱ

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - D2C043 (D2C043_DICD5)

UniProt

D2C043 - D2C043_DICD5

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Rhamnogalacturonate lyase

Dd586_2097

Select a section on the left to see content.

<p>Provides any useful information about the protein, mostly biological knowledge.</p><p><a href='../manual/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:</p><p><a href='../manual/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:</p><p><a href='../manual/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Enzyme and pathway databases

Protein family/group databases

<p>Provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.</p><p><a href='../manual/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>Describes post-translational modifications (PTMs) and/or processing events.</p><p><a href='../manual/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

<p>Provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.</p><p><a href='../manual/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>Provides information on sequence similarities with other proteins and the domain(s) present in a protein.</p><p><a href='../manual/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Phylogenomic databases

Family and domain databases

<p>Displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including length and molecular weight.</p><p><a href='../manual/sequences_section' target='_top'>More...</a></p>Sequencei

Sequence databases

Genome annotation databases

<p>Is used to point to information related to entries and found in data collections other than UniProtKB.</p><p><a href='../manual/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Protein family/group databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

<p>Provides general information on the entry.</p><p><a href='../manual/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>Contains any relevant information that doesn’t fit in any other defined sections</p><p><a href='../manual/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

PTM / Processingⁱ

Interactionⁱ

Family & Domainsⁱ

Sequenceⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ