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Protein
Submitted name:

Rhamnogalacturonate lyase

Gene

Dd586_2097

Organism
Dickeya dadantii (strain Ech586)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciDDAD590409:GHDW-2100-MONOMER.

Protein family/group databases

CAZyiPL4. Polysaccharide Lyase Family 4.

Names & Taxonomyi

Protein namesi
Submitted name:
Rhamnogalacturonate lyaseImported
Gene namesi
Ordered Locus Names:Dd586_2097Imported
OrganismiDickeya dadantii (strain Ech586)Imported
Taxonomic identifieri590409 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaeDickeya
Proteomesi
  • UP000001446 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_500302990221 – 570Sequence analysisAdd BLAST550

Interactioni

Protein-protein interaction databases

STRINGi590409.Dd586_2097.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini340 – 396fn3_3InterPro annotationAdd BLAST57
Domaini413 – 568CBM-likeInterPro annotationAdd BLAST156

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOGENOMiHOG000142194.
KOiK18195.
OMAiGWISENP.
OrthoDBiPOG091H1HV2.

Family and domain databases

CDDicd10316. RGL4_M. 1 hit.
Gene3Di2.60.120.260. 1 hit.
2.60.40.1120. 1 hit.
2.70.98.10. 1 hit.
InterProiIPR013784. Carb-bd-like_fold.
IPR014766. CarboxyPept_regulatory_dom.
IPR011013. Gal_mutarotase_SF_dom.
IPR008979. Galactose-bd-like.
IPR014718. GH-type_carb-bd.
IPR029413. RG-lyase_II.
IPR029411. RG-lyase_III.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamiPF14683. CBM-like. 1 hit.
PF14686. fn3_3. 1 hit.
PF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF74650. SSF74650. 1 hit.

Sequencei

Sequence statusi: Complete.

D2C043-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQSRKMLIAI SILGSSLAQA ASPSDVSVGL SGMKAQIDNG LVSVAIGSDG
60 70 80 90 100
SIGTLSNGSQ NLIDKANSQV NALGKSSTGY LDYYSGAFLK FKPQQISVIE
110 120 130 140 150
NTKDIVHIAY IDNETSALSL EYHFIVRRGV SGIYSYAVAR NDTSSNLTVS
160 170 180 190 200
ELRGVYRFNP FLLDHISNGI HTTKPYLYSQ LNNFEKIQDE TWKLPDGSYY
210 220 230 240 250
SKYDFAGYMR KTPVWGVYGN NIGAWIVPGS TEYMSGDDTK QDLMVHQDGL
260 270 280 290 300
AIMYMTGSHF GTPDLIAPPG WQKLYGPWLL YVNAGTDEQM YSDALARSLQ
310 320 330 340 350
EIASWPYNWV NDSRFSVDRA SVTGSVNTTV PLNVTLSSSL NEASDVQTLG
360 370 380 390 400
YAFTTNTDSQ GNFRFDKVRK GKYTLTIYAN GGSRPGVLYS DVVNVTGNTP
410 420 430 440 450
IPAIQLAQAA PVVWAIGQSD RLASEFRFGD QLRNYHWQND VPANLTYTIG
460 470 480 490 500
ESSPAQDWYY AQTNPGSWNV NYIDRADGSS RVLNVAFAAA SNRGMTNPTT
510 520 530 540 550
PSLSVLVNGT KVKDIQYDND KSVYRGALNS GKYHYERIPI DSGLLRDGTN
560 570
TITFTLNGGT FMYDAVTLTK
Length:570
Mass (Da):62,557
Last modified:February 9, 2010 - v1
Checksum:i24553A479F9CD504
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001836 Genomic DNA. Translation: ACZ76952.1.
RefSeqiWP_012884769.1. NC_013592.1.

Genome annotation databases

EnsemblBacteriaiACZ76952; ACZ76952; Dd586_2097.
KEGGiddc:Dd586_2097.
PATRICi32070917. VBIDicDad110536_2109.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001836 Genomic DNA. Translation: ACZ76952.1.
RefSeqiWP_012884769.1. NC_013592.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi590409.Dd586_2097.

Protein family/group databases

CAZyiPL4. Polysaccharide Lyase Family 4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACZ76952; ACZ76952; Dd586_2097.
KEGGiddc:Dd586_2097.
PATRICi32070917. VBIDicDad110536_2109.

Phylogenomic databases

HOGENOMiHOG000142194.
KOiK18195.
OMAiGWISENP.
OrthoDBiPOG091H1HV2.

Enzyme and pathway databases

BioCyciDDAD590409:GHDW-2100-MONOMER.

Family and domain databases

CDDicd10316. RGL4_M. 1 hit.
Gene3Di2.60.120.260. 1 hit.
2.60.40.1120. 1 hit.
2.70.98.10. 1 hit.
InterProiIPR013784. Carb-bd-like_fold.
IPR014766. CarboxyPept_regulatory_dom.
IPR011013. Gal_mutarotase_SF_dom.
IPR008979. Galactose-bd-like.
IPR014718. GH-type_carb-bd.
IPR029413. RG-lyase_II.
IPR029411. RG-lyase_III.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamiPF14683. CBM-like. 1 hit.
PF14686. fn3_3. 1 hit.
PF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF74650. SSF74650. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD2C043_DICD5
AccessioniPrimary (citable) accession number: D2C043
Entry historyi
Integrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: November 30, 2016
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.