UniProtKB - D2C043 (D2C043_DICZ5)
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Protein
Submitted name:
Rhamnogalacturonate lyase
Gene
Dd586_2097
Organism
Dickeya zeae (strain Ech586) (Dickeya dadantii (strain Ech586))
Status
Functioni
GO - Molecular functioni
- carbohydrate binding Source: InterPro
- lyase activity Source: UniProtKB-KW
GO - Biological processi
- carbohydrate metabolic process Source: InterPro
Keywordsi
Molecular function | LyaseImported |
Enzyme and pathway databases
BioCyci | DDAD590409:G1GGV-2123-MONOMER. |
Protein family/group databases
CAZyi | PL4. Polysaccharide Lyase Family 4. |
Names & Taxonomyi
Protein namesi | Submitted name: Rhamnogalacturonate lyaseImported |
Gene namesi | Ordered Locus Names:Dd586_2097Imported |
Organismi | Dickeya zeae (strain Ech586) (Dickeya dadantii (strain Ech586))Imported |
Taxonomic identifieri | 590409 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Pectobacteriaceae › Dickeya › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 20 | Sequence analysisAdd BLAST | 20 | |
ChainiPRO_5003029902 | 21 – 570 | Sequence analysisAdd BLAST | 550 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 341 – 396 | fn3_3InterPro annotationAdd BLAST | 56 | |
Domaini | 413 – 568 | CBM-likeInterPro annotationAdd BLAST | 156 |
Keywords - Domaini
SignalSequence analysisPhylogenomic databases
HOGENOMi | HOG000142194. |
KOi | K18195. |
OMAi | KIQDETW. |
OrthoDBi | POG091H1HV2. |
Family and domain databases
CDDi | cd10316. RGL4_M. 1 hit. |
InterProi | View protein in InterPro IPR013784. Carb-bd-like_fold. IPR011013. Gal_mutarotase_sf_dom. IPR008979. Galactose-bd-like_sf. IPR029413. RG-lyase_II. IPR029411. RG-lyase_III. IPR010325. Rhamnogal_lyase. |
Pfami | View protein in Pfam PF14683. CBM-like. 1 hit. PF14686. fn3_3. 1 hit. PF06045. Rhamnogal_lyase. 1 hit. |
SUPFAMi | SSF49452. SSF49452. 1 hit. SSF49785. SSF49785. 1 hit. SSF74650. SSF74650. 1 hit. |
i Sequence
Sequence statusi: Complete.
D2C043-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MQSRKMLIAI SILGSSLAQA ASPSDVSVGL SGMKAQIDNG LVSVAIGSDG
60 70 80 90 100
SIGTLSNGSQ NLIDKANSQV NALGKSSTGY LDYYSGAFLK FKPQQISVIE
110 120 130 140 150
NTKDIVHIAY IDNETSALSL EYHFIVRRGV SGIYSYAVAR NDTSSNLTVS
160 170 180 190 200
ELRGVYRFNP FLLDHISNGI HTTKPYLYSQ LNNFEKIQDE TWKLPDGSYY
210 220 230 240 250
SKYDFAGYMR KTPVWGVYGN NIGAWIVPGS TEYMSGDDTK QDLMVHQDGL
260 270 280 290 300
AIMYMTGSHF GTPDLIAPPG WQKLYGPWLL YVNAGTDEQM YSDALARSLQ
310 320 330 340 350
EIASWPYNWV NDSRFSVDRA SVTGSVNTTV PLNVTLSSSL NEASDVQTLG
360 370 380 390 400
YAFTTNTDSQ GNFRFDKVRK GKYTLTIYAN GGSRPGVLYS DVVNVTGNTP
410 420 430 440 450
IPAIQLAQAA PVVWAIGQSD RLASEFRFGD QLRNYHWQND VPANLTYTIG
460 470 480 490 500
ESSPAQDWYY AQTNPGSWNV NYIDRADGSS RVLNVAFAAA SNRGMTNPTT
510 520 530 540 550
PSLSVLVNGT KVKDIQYDND KSVYRGALNS GKYHYERIPI DSGLLRDGTN
560 570
TITFTLNGGT FMYDAVTLTK
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CP001836 Genomic DNA. Translation: ACZ76952.1. |
RefSeqi | WP_012884769.1. NC_013592.1. |
Genome annotation databases
EnsemblBacteriai | ACZ76952; ACZ76952; Dd586_2097. |
GeneIDi | 33924753. |
KEGGi | ddc:Dd586_2097. |
Similar proteinsi
Entry informationi
Entry namei | D2C043_DICZ5 | |
Accessioni | D2C043Primary (citable) accession number: D2C043 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | February 9, 2010 |
Last sequence update: | February 9, 2010 | |
Last modified: | February 28, 2018 | |
This is version 40 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |