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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

Dd586_1906

Organism
Dickeya dadantii (strain Ech586)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciDDAD590409:GHDW-1913-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:Dd586_1906Imported
OrganismiDickeya dadantii (strain Ech586)Imported
Taxonomic identifieri590409 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaeDickeya
Proteomesi
  • UP000001446 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 31Sequence analysisAdd BLAST31
ChainiPRO_500302886432 – 690Sequence analysisAdd BLAST659

Interactioni

Protein-protein interaction databases

STRINGi590409.Dd586_1906.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini183 – 322Secretin_NInterPro annotationAdd BLAST140

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000270092.
KOiK03219.
OMAiYLMARIS.
OrthoDBiPOG091H00DF.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR010563. Pilus_assembly_TraK.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
PF06586. TraK. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.

Sequencei

Sequence statusi: Complete.

D2BZ70-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRNALYALLF NLYRLFCWSL VLMGMLPGAH AATPPDWNKG AYAYSAEQTP
60 70 80 90 100
LSAVLQDFAN SHGVDLRVGN IEDATIDAKI RADNATAFLD RLALEHRFQW
110 120 130 140 150
FVYNNVLYVS PQDEQTSVRI EVSQDAAPDM KQALTGIGLL DTRFGWGELP
160 170 180 190 200
DEGVVLVTGP AEYISLIRNF SQQRETKDDR RKVMIFPLRY ASVSDRTIQY
210 220 230 240 250
RDQRLVIPGV ATMLNELMDG NRSAPAGASG AVSGMGSEGG MAQANGAGGQ
260 270 280 290 300
DASQAIERNA RAMLARLASR ASSGEAASSR KKDQLNGKVS ADVRNNALLI
310 320 330 340 350
RDDEKRREEY QQLIDKIDVP QNLVNIDAII LDVDRTALSR LEANWQGKLG
360 370 380 390 400
AVTGGANLMS GSSTLFVSDF KRFFADIQAL EGEGTASIVA NPSVLTLENQ
410 420 430 440 450
PAVIDFSRTA FITATGERVA NVQPVTAGTS LQVTPRVVGR GSTSSIQLVI
460 470 480 490 500
DIEDGQVETN TEGNASGVKR GTVSTQALIG ENRALVLGGF HVEESGDRDK
510 520 530 540 550
RVPLLGDIPW IGKLFTSRQH EVSRRERLFI LTPHLIGDQN DPTRFVSVDN
560 570 580 590 600
RRQLNDAMGR VAQRNSKTDL FGMVENAMRD LASGQTPAGF TSDSHGPRLS
610 620 630 640 650
EICRTSPSLS YQSNRHQWYS NVSFSLAVGV VKNTGTRPQR FDEARCASNR
660 670 680 690
TLAVAAWPKT TLAPGESTEV YLALLPAKNT QPARASLITP
Length:690
Mass (Da):75,142
Last modified:February 9, 2010 - v1
Checksum:i625A1774F7E09152
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001836 Genomic DNA. Translation: ACZ76765.1.
RefSeqiWP_012884587.1. NC_013592.1.

Genome annotation databases

EnsemblBacteriaiACZ76765; ACZ76765; Dd586_1906.
KEGGiddc:Dd586_1906.
PATRICi32070527. VBIDicDad110536_1913.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001836 Genomic DNA. Translation: ACZ76765.1.
RefSeqiWP_012884587.1. NC_013592.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi590409.Dd586_1906.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACZ76765; ACZ76765; Dd586_1906.
KEGGiddc:Dd586_1906.
PATRICi32070527. VBIDicDad110536_1913.

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000270092.
KOiK03219.
OMAiYLMARIS.
OrthoDBiPOG091H00DF.

Enzyme and pathway databases

BioCyciDDAD590409:GHDW-1913-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR010563. Pilus_assembly_TraK.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
PF06586. TraK. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD2BZ70_DICD5
AccessioniPrimary (citable) accession number: D2BZ70
Entry historyi
Integrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: November 2, 2016
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.