D2BS23 (D2BS23_DICD5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Nickel-dependent hydrogenase large subunit EMBL ACZ77570.1

Gene names

Ordered Locus Names:

Dd586_2730

Organism

Dickeya dadantii (strain Ech586) [Complete proteome] [HAMAP] EMBL ACZ77570.1

Taxonomic identifier

590409 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Dickeya › Dickeya dadantii

Protein attributes

Sequence length	568 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. RuleBase RU003896

Ontologies

Keywords
Ligand	Metal-binding RuleBase RU003896 Nickel RuleBase RU003896
Molecular function	Oxidoreductase RuleBase RU003896
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	ferredoxin hydrogenase activity Inferred from electronic annotation. Source: InterPro nickel cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2BS23 [UniParc]. Last modified February 9, 2010. Version 1. Checksum: 0DACDF21364237C5	FASTA	568	62,943
	10 20 30 40 50 60 MSQRITIDPI TRIEGHLRID CEIENGKVTK AWSSGTMWRG MEEIVKGRDP RDAWMIVQRI 70 80 90 100 110 120 CGVCTTVHAI ASVRAVENGL GLNVPVNAQY IRNLILAAHS IHDHIVHFYQ LSALDWVDVT 130 140 150 160 170 180 SALKADPQKA ATLLNGLSTW PLNTAAEFTK VQQKLKDLVA SGQLGIFANG YWGHPAMSLP 190 200 210 220 230 240 PEVNLIAVAH YLQALECQRD ANRIVAILGG KSPHIQNLAV GGVANPINLD APSVLNLERL 250 260 270 280 290 300 MYVKSFIDRL GDFIEQVYKV DCAVIAAHYP QWLSLGRGAD HYLSVPELPT DNKNGSFLLA 310 320 330 340 350 360 GGYIENSDLS TYRPITSHSD KFLIEGIRES GKHAWYQDDQ PLAPWEGLTR PKYTGWHEDG 370 380 390 400 410 420 KYSWVKSPTF YGKTVEVGPL AWLLCGLAAK HKDTLTHFSQ VKAAYQTLSG HQLEEKHLHS 430 440 450 460 470 480 TLGRVIGRTV HCCVLKDTLA QQWQALVDNI GKGDHQTFIK PDFSPDTEFH GVGFGEMPRG 490 500 510 520 530 540 MLSHWVVFKN GKITNYQAVV PSTWTSCPRN GEDKPGPYEQ SLVGTPVADP HKPLEVVRTI 550 560 HSFDPCMSCA VHVVDTVNGN EVTRVKVL

References

[1]

"Complete sequence of Dickeya dadantii Ech586." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Balakrishnan V., Glasner J., Perna N.T. Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ech586.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001836 Genomic DNA. Translation: ACZ77570.1.
RefSeq	YP_003334275.1. NC_013592.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACZ77570; ACZ77570; Dd586_2730.
GeneID	8661675.
KEGG	ddc:Dd586_2730.
PATRIC	32072192. VBIDicDad110536_2740.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000278799.
KO	K06281.
Enzyme and pathway databases
BioCyc	DDAD590409:GHDW-2782-MONOMER.
Family and domain databases
InterPro	IPR001501. Ni-dep_hyd_lsu. IPR018194. Ni-dep_hyd_lsu_Ni_BS. [Graphical view]
Pfam	PF00374. NiFeSe_Hases. 1 hit. [Graphical view]
PROSITE	PS00507. NI_HGENASE_L_1. 1 hit. PS00508. NI_HGENASE_L_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2BS23_DICD5

Accession

Primary (citable) accession number: D2BS23

Entry history

Integrated into UniProtKB/TrEMBL:	February 9, 2010
Last sequence update:	February 9, 2010
Last modified:	May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)