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D2BI46

- D2BI46_DEHMV

UniProt

D2BI46 - D2BI46_DEHMV

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Protein

Elongation factor Tu

Gene

tuf

Organism
Dehalococcoides mccartyi (strain VS)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi19 – 268GTPUniRule annotation
Nucleotide bindingi81 – 855GTPUniRule annotation
Nucleotide bindingi136 – 1394GTPUniRule annotation

GO - Molecular functioni

  1. GTPase activity Source: InterPro
  2. GTP binding Source: UniProtKB-HAMAP
  3. translation elongation factor activity Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Elongation factorUniRule annotation

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciDSP311424:GJ8J-843-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor TuUniRule annotation
Short name:
EF-TuUniRule annotation
Gene namesi
Name:tufUniRule annotationImported
Ordered Locus Names:DhcVS_869Imported
OrganismiDehalococcoides mccartyi (strain VS)Imported
Taxonomic identifieri311424 [NCBI]
Taxonomic lineageiBacteriaChloroflexiDehalococcoidiaDehalococcoidalesDehalococcoidaceaeDehalococcoides
ProteomesiUP000002506: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Monomer.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliD2BI46.
SMRiD2BI46. Positions 2-400.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000229290.
KOiK02358.
OMAiSSYSISH.
OrthoDBiEOG6R5C6X.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.

Sequencei

Sequence statusi: Complete.

D2BI46-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKQKFDRSK PHCNVGTIGH VDHGKTTLTA AITKTLSTKG WADFRAYDQI
60 70 80 90 100
DNAPEEKARG LTIAISHIEY QTETRHYAHI DCPGHADYIK NMITGAAQMD
110 120 130 140 150
GAILVVSAPD GPMPQTREHV LLIHQVEVPA VVVALNKCDM MDDEELLELV
160 170 180 190 200
ELEVRELLTK NSFPGDEIPV VRVSAIKALE CGCGKRECEW CGRIWKLMDA
210 220 230 240 250
VDSYIPIPPR PVDKPFLMKV EDVFSIKGRG TVATGRVERG VIKGGDEVDL
260 270 280 290 300
VGLHHEPRKI VVTSLEMFHK ILDSAEPGDA VGLLLRGVER EDIERGMVLA
310 320 330 340 350
KPGSIKPHVN AEAEVYVLSK DEGGRHTPFF NGYKPQFFFG TTDVTGEIHL
360 370 380 390 400
PEGVEMVVPG DHVKMKISTI YPVAMEKGMR FAIREGGKTV GAGAISQVLA
Length:400
Mass (Da):43,944
Last modified:February 9, 2010 - v1
Checksum:i766975BAE37D1208
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001827 Genomic DNA. Translation: ACZ61996.1.
RefSeqiWP_012882149.1. NC_013552.1.
YP_003330324.1. NC_013552.1.

Genome annotation databases

EnsemblBacteriaiACZ61996; ACZ61996; DhcVS_869.
GeneIDi8657801.
KEGGidev:DhcVS_869.
PATRICi32058640. VBIDehSp95780_0830.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001827 Genomic DNA. Translation: ACZ61996.1 .
RefSeqi WP_012882149.1. NC_013552.1.
YP_003330324.1. NC_013552.1.

3D structure databases

ProteinModelPortali D2BI46.
SMRi D2BI46. Positions 2-400.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACZ61996 ; ACZ61996 ; DhcVS_869 .
GeneIDi 8657801.
KEGGi dev:DhcVS_869.
PATRICi 32058640. VBIDehSp95780_0830.

Phylogenomic databases

HOGENOMi HOG000229290.
KOi K02358.
OMAi SSYSISH.
OrthoDBi EOG6R5C6X.

Enzyme and pathway databases

BioCyci DSP311424:GJ8J-843-MONOMER.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
HAMAPi MF_00118_B. EF_Tu_B.
InterProi IPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view ]
Pfami PF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view ]
PRINTSi PR00315. ELONGATNFCT.
SUPFAMi SSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides."
    McMurdie P.J., Behrens S.F., Muller J.A., Goke J., Ritalahti K.M., Wagner R., Goltsman E., Lapidus A., Holmes S., Loffler F.E., Spormann A.M.
    PLoS Genet. 5:E1000714-E1000714(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: VSImported.

Entry informationi

Entry nameiD2BI46_DEHMV
AccessioniPrimary (citable) accession number: D2BI46
Entry historyi
Integrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: October 29, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3