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D2BI46 (D2BI46_DEHMV) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118 EMBL ACZ61996.1
Ordered Locus Names:DhcVS_869 EMBL ACZ61996.1
OrganismDehalococcoides mccartyi (strain VS) [Complete proteome] [HAMAP] EMBL ACZ61996.1
Taxonomic identifier311424 [NCBI]
Taxonomic lineageBacteriaChloroflexiDehalococcoidiaDehalococcoidalesDehalococcoidaceaeDehalococcoides

Protein attributes

Sequence length400 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. HAMAP-Rule MF_00118 RuleBase RU000325

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. HAMAP-Rule MF_00118 RuleBase RU000325

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D2BI46 [UniParc].

Last modified February 9, 2010. Version 1.
Checksum: 766975BAE37D1208

FASTA40043,944
        10         20         30         40         50         60 
MAKQKFDRSK PHCNVGTIGH VDHGKTTLTA AITKTLSTKG WADFRAYDQI DNAPEEKARG 

        70         80         90        100        110        120 
LTIAISHIEY QTETRHYAHI DCPGHADYIK NMITGAAQMD GAILVVSAPD GPMPQTREHV 

       130        140        150        160        170        180 
LLIHQVEVPA VVVALNKCDM MDDEELLELV ELEVRELLTK NSFPGDEIPV VRVSAIKALE 

       190        200        210        220        230        240 
CGCGKRECEW CGRIWKLMDA VDSYIPIPPR PVDKPFLMKV EDVFSIKGRG TVATGRVERG 

       250        260        270        280        290        300 
VIKGGDEVDL VGLHHEPRKI VVTSLEMFHK ILDSAEPGDA VGLLLRGVER EDIERGMVLA 

       310        320        330        340        350        360 
KPGSIKPHVN AEAEVYVLSK DEGGRHTPFF NGYKPQFFFG TTDVTGEIHL PEGVEMVVPG 

       370        380        390        400 
DHVKMKISTI YPVAMEKGMR FAIREGGKTV GAGAISQVLA 

« Hide

References

[1]"Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides."
McMurdie P.J., Behrens S.F., Muller J.A., Goke J., Ritalahti K.M., Wagner R., Goltsman E., Lapidus A., Holmes S., Loffler F.E., Spormann A.M.
PLoS Genet. 5:E1000714-E1000714(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: VS EMBL ACZ61996.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001827 Genomic DNA. Translation: ACZ61996.1.
RefSeqYP_003330324.1. NC_013552.1.

3D structure databases

ProteinModelPortalD2BI46.
SMRD2BI46. Positions 2-400.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACZ61996; ACZ61996; DhcVS_869.
GeneID8657801.
KEGGdev:DhcVS_869.
PATRIC32058640. VBIDehSp95780_0830.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.
OMASSYSISH.
OrthoDBEOG6R5C6X.

Enzyme and pathway databases

BioCycDSP311424:GJ8J-843-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD2BI46_DEHMV
AccessionPrimary (citable) accession number: D2BI46
Entry history
Integrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: June 11, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)