D2B3Y4 (D2B3Y4_STRRD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL ACZ89419.1

Gene names

Ordered Locus Names:

Sros_6710 EMBL ACZ89419.1

Organism

Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) [Complete proteome] [HAMAP] EMBL ACZ89419.1

Taxonomic identifier

479432 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptosporangineae › Streptosporangiaceae › Streptosporangium › Streptosporangium roseum

Protein attributes

Sequence length	346 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACZ89419.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D2B3Y4 [UniParc]. Last modified February 9, 2010. Version 1. Checksum: 048A87EDAC0AC4E1	FASTA	346	38,493
	10 20 30 40 50 60 MRLPIAPPLA PMLAKAVRSL PPQDGTLFYE PKWDGFRCVV FRDGDEVYLG SRNERPFTRY 70 80 90 100 110 120 FPELVEAVRA ELPDRVVVDG EIVVRDGQTL DFEALQQRIH PAASRVRLLA GQTPASFVAF 130 140 150 160 170 180 DLLALGEESL LDVPFAARRT RLESIFGGAG HAVRLTPITT SEERAAEWFA AFEGAGLDGI 190 200 210 220 230 240 VVKPGGLPYQ PDKRVMSKVK HERTADVVVA GYREHKSGPV VGSLLLGLHD AEGVLHHVGV 250 260 270 280 290 300 AASFTMKRRA ELVEELAPYV SRDGDHPWSA ASLPGAISKW SATKDLSFVP LRSELVVEVA 310 320 330 340 YDHMEGRRFR HTAQFRRWRP DRTPESCTYE QLERPVSYDL DDILTG

References

[1]

"Complete genome sequence of Streptosporangium roseum type strain (NI 9100T)." Nolan M., Sikorski J., Jando M., Lucas S., Lapidus A., Glavina Del Rio T., Chen F., Tice H., Pitluck S., Cheng J.F., Chertkov O., Sims D., Meincke L., Brettin T., Han C., Detter J.C., Bruce D., Goodwin L. , Land M., Hauser L., Chang Y.J., Jeffries C.D., Ivanova N., Mavromatis K., Mikhailova N., Chen A., Palaniappan K., Chain P., Rohde M., Goker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P. Stand. Genomic Sci. 2:29-37(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001814 Genomic DNA. Translation: ACZ89419.1.
RefSeq	YP_003342162.1. NC_013595.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACZ89419; ACZ89419; Sros_6710.
GeneID	8670019.
KEGG	sro:Sros_6710.
PATRIC	32475274. VBIStrRos112010_6608.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222508.
KO	K01971.
OMA	FKIKHER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D2B3Y4_STRRD

Accession

Primary (citable) accession number: D2B3Y4

Entry history

Integrated into UniProtKB/TrEMBL:	February 9, 2010
Last sequence update:	February 9, 2010
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)