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Protein
Submitted name:

Alpha amylase, catalytic domain protein

Gene

HMPREF0645_0545

Organism
Prevotella bergensis DSM 17361
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferaseImported, Transferase

Enzyme and pathway databases

BioCyciPBER585502-HMP:GMO9-2241-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase, catalytic domain proteinImported (EC:2.4.1.19Imported)
Gene namesi
ORF Names:HMPREF0645_0545Imported
OrganismiPrevotella bergensis DSM 17361Imported
Taxonomic identifieri585502 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesPrevotellaceaePrevotella
Proteomesi
  • UP000003160 Componenti: Unassembled WGS sequence

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_500302588620 – 639Sequence analysisAdd BLAST620

Interactioni

Protein-protein interaction databases

STRINGi585502.HMPREF0645_0545

Structurei

3D structure databases

ProteinModelPortaliD1PUB0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini127 – 552AamyInterPro annotationAdd BLAST426

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.SAAS annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108IUK Bacteria
COG0366 LUCA
OrthoDBiPOG091H07J7

Family and domain databases

Gene3Di2.60.40.10, 1 hit
2.60.40.1180, 1 hit
InterProiView protein in InterPro
IPR015171 Cyc-maltodext_N
IPR019492 Cyclo-malto-dextrinase_C
IPR006047 Glyco_hydro_13_cat_dom
IPR013780 Glyco_hydro_b
IPR017853 Glycoside_hydrolase_SF
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
PfamiView protein in Pfam
PF00128 Alpha-amylase, 1 hit
PF10438 Cyc-maltodext_C, 1 hit
PF09087 Cyc-maltodext_N, 1 hit
SMARTiView protein in SMART
SM00642 Aamy, 1 hit
SUPFAMiSSF51445 SSF51445, 1 hit
SSF81296 SSF81296, 1 hit

Sequencei

Sequence statusi: Complete.

D1PUB0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKVIFIFCL LMLAFCMNAK VKITRIDPTD WYVGMQDASL QLMFYGNDLQ
60 70 80 90 100
GADVTTDYAG VSVDSVVSLP NTHYLLAYLN LRDVKPGTMT LKLTKGKNTT
110 120 130 140 150
KVQYMLKERE MSGDKRMGFT NADVLYMLMP DRFANGNGKN DQIKGMNTYV
160 170 180 190 200
CDRTKPSLRH GGDLEGIRRH LDYFNQLGVT ALWFTPVLEN NSPDDHGFST
210 220 230 240 250
YHGYATTDYY RVDPRFGTNE EYRRLIDEAH QKGLKVVMDM IFNHCGLEHP
260 270 280 290 300
WIDEIPSPDW FNYPDWLGER SNTGRNMQTG LPDGTEAKSK YLQTSYKLTP
310 320 330 340 350
VLDSYASKVD MKETVDGWFV PSMPDLNQRN PHVIKYLIQN SIWWIETVGI
360 370 380 390 400
DGIRMDTYPY ADRQAMAEWM KTLDTEYPNF NVVGETWVTE PPYTAAWQKD
410 420 430 440 450
SKLSEVNSYL KSVMDFSFFE KINKAKNEET DDWWEGFNRI YNSLVYDYLY
460 470 480 490 500
PNPSSVMAFI ENHDTDRFLG NGQDVPALKQ ALALLLTINR TPQLYYGTEV
510 520 530 540 550
LMNGTKEVTD GNVRKDFPGG FPGDARNCFT AEGRTKAENE MFNWLSNVLH
560 570 580 590 600
WRKDNSVITQ GSQTQFIPYG GIYVIARQHN DKTVLTVLNG KSSEATMTVK
610 620 630
RYAEVIGKHT SAKDILTGQA VDLTKDIPMK GCGVMILEF
Length:639
Mass (Da):73,077
Last modified:February 9, 2010 - v1
Checksum:i0547A0D449369938
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACKS01000025 Genomic DNA Translation: EFA45022.1
RefSeqiWP_007174893.1, NZ_GG704782.1

Genome annotation databases

EnsemblBacteriaiEFA45022; EFA45022; HMPREF0645_0545

Similar proteinsi

Entry informationi

Entry nameiD1PUB0_9BACT
AccessioniPrimary (citable) accession number: D1PUB0
Entry historyiIntegrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: February 28, 2018
This is version 34 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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