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Protein
Submitted name:

PAmCherry1 protein

Gene

PAmCherry

Organism
Discosoma sp. (Sea anemone)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
PAmCherry1 proteinImported
Gene namesi
ORF Names:PAmCherryImported, PAmCherry1Imported
OrganismiDiscosoma sp. (Sea anemone)Imported
Taxonomic identifieri86600 [NCBI]
Taxonomic lineageiEukaryotaMetazoaCnidariaAnthozoaHexacoralliaCorallimorphariaDiscosomatidaeDiscosoma

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3KCSX-ray1.50A1-236[»]
3KCTX-ray1.65A1-236[»]
3LF3X-ray1.15A6-236[»]
3LF4X-ray1.81A6-71[»]
3NEDX-ray0.95A2-236[»]
3NEZX-ray1.70A/B/C/D2-236[»]
5H87X-ray2.24A/B/C/D2-236[»]
5H89X-ray1.76A/B/C/D2-236[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

Gene3Di2.40.155.10. 1 hit.
InterProiIPR009017. GFP.
IPR023413. GFP-like.
IPR011584. GFP-related.
IPR000786. Green_fluorescent_prot.
[Graphical view]
PfamiPF01353. GFP. 1 hit.
[Graphical view]
PRINTSiPR01229. GFLUORESCENT.
SUPFAMiSSF54511. SSF54511. 1 hit.

Sequencei

Sequence statusi: Complete.

D1MPT3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSKGEEDNM AIIKEFMRFK VHMEGSVNGH VFEIEGEGEG RPYEGTQTAK
60 70 80 90 100
LKVTKGGPLP FTWDILSPQF MYGSNAYVKH PADIPDYFKL SFPEGFKWER
110 120 130 140 150
VMKFEDGGVV TVTQDSSLQD GEFIYKVKLR GTNFPSDGPV MQKKTMGWEA
160 170 180 190 200
LSERMYPEDG ALKGEVKPRV KLKDGGHYDA EVKTTYKAKK PVQLPGAYNV
210 220 230
NRKLDITSHN EDYTIVEQYE RAEGRHSTGG MDELYK
Length:236
Mass (Da):26,766
Last modified:January 19, 2010 - v1
Checksum:i0E1672E3C6052221
GO

Cross-referencesi

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3KCSX-ray1.50A1-236[»]
3KCTX-ray1.65A1-236[»]
3LF3X-ray1.15A6-236[»]
3LF4X-ray1.81A6-71[»]
3NEDX-ray0.95A2-236[»]
3NEZX-ray1.70A/B/C/D2-236[»]
5H87X-ray2.24A/B/C/D2-236[»]
5H89X-ray1.76A/B/C/D2-236[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.40.155.10. 1 hit.
InterProiIPR009017. GFP.
IPR023413. GFP-like.
IPR011584. GFP-related.
IPR000786. Green_fluorescent_prot.
[Graphical view]
PfamiPF01353. GFP. 1 hit.
[Graphical view]
PRINTSiPR01229. GFLUORESCENT.
SUPFAMiSSF54511. SSF54511. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Photoactivation mechanism of PAmCherry based on crystal structures of the protein in the dark and fluorescent states."
    Subach F.V., Malashkevich V.N., Zencheck W.D., Xiao H., Filonov G.S., Almo S.C., Verkhusha V.V.
    Proc. Natl. Acad. Sci. U.S.A. 106:21097-21102(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS).
  2. "Understanding blue-to-red conversion in monomeric fluorescent timers and hydrolytic degradation of their chromophores."
    Pletnev S., Subach F.V., Dauter Z., Wlodawer A., Verkhusha V.V.
    J. Am. Chem. Soc. 132:2243-2253(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.15 ANGSTROMS) OF 6-236.
  3. "Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries."
    Chica R.A., Moore M.M., Allen B.D., Mayo S.L.
    Proc. Natl. Acad. Sci. U.S.A. 107:20257-20262(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (0.95 ANGSTROMS) OF 2-236.
  4. Cited for: X-RAY CRYSTALLOGRAPHY (1.76 ANGSTROMS) OF 2-236.

Entry informationi

Entry nameiD1MPT3_DISSP
AccessioniPrimary (citable) accession number: D1MPT3
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: May 11, 2016
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.