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Protein

Ribonuclease R

Gene

vacB

Organism
Mycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease

Keywords - Ligandi

RNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciMHOM347256:GBZD-207-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
Short name:
RNase RUniRule annotation
Gene namesi
Name:vacBImported
Synonyms:rnrUniRule annotation
Ordered Locus Names:MHO_1900Imported
OrganismiMycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21)Imported
Taxonomic identifieri347256 [NCBI]
Taxonomic lineageiBacteriaTenericutesMollicutesMycoplasmataceaeMycoplasma
ProteomesiUP000002631 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi347256.MHO_1900.

Structurei

3D structure databases

ProteinModelPortaliD1J7X7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini640 – 71778S1 motifUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RNR ribonuclease family. RNase R subfamily.UniRule annotation
Contains 1 S1 motif domain.UniRule annotation
Contains S1 motif domain.SAAS annotation
Contains Smotif domain.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000071119.
KOiK12573.
OMAiLFIHIAD.
OrthoDBiEOG6Q5NRD.

Family and domain databases

HAMAPiMF_01895. RNase_R.
InterProiIPR012340. NA-bd_OB-fold.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
IPR022967. S1_dom.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1J7X7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTYIKNFKNK NNNPKINEEQ VLKCIRESDG ITFIEIAKKL RIPAFLNFEL
60 70 80 90 100
SEILNNYLSK KLIDTKSDEK YIAIYFLTKV QKEISITAKR LGFIDFEMQE
110 120 130 140 150
ESQTKVFSAF LAPFQLKAVL DKDLLLANIY YYYENGIKKY KGDIIQILNH
160 170 180 190 200
ARKTIVGTIE KSANKLFFNA YDEKDRAKFE IINEKECPDI TKLKNSLVSC
210 220 230 240 250
EILKPNNKKV AIAYKNIIGN INDKEHVIKK IIAQNDVNVN FPQNLLEYVS
260 270 280 290 300
SIPSFVSQEE INSRINLIDL MTVTIDGLDT KDFDDAISCY KNEKNNWKLF
310 320 330 340 350
IHIADVSYYV KENDLIDNEA LLRGTSIYLP DRVIPMLPVE LSNGICSLNP
360 370 380 390 400
NEVRACITLE LEIDKQGNNI SYKIYPSVIK SNYRLTYNEV NDFYSNIKSV
410 420 430 440 450
PDDVANMLLH ARDLAKIIRS KKISEGYVDF EIQESKVIMD GTKVVDIKVK
460 470 480 490 500
EEGESEKLIE DFMVRANETV AQMMTNLKIP SIYRIHEKPS PEKLTLLQEL
510 520 530 540 550
FNFCGFKDVK VPYDGEPKSF GEMIAKLKEH KFDDFIKMAL LRTMQKAIYS
560 570 580 590 600
SNNIGHFGLA SKAYSHFTSP IRRYPDLLLH RLIRTYIFEK KEITPDLSET
610 620 630 640 650
LKQKISQIAL MNSESEKNAM VVERSVVDVR KSEFFENLIN KQFFATLVSI
660 670 680 690 700
EKFGMFFNID EYQTSVLVRF ENLTIPTNKD NDFQASSKNK IYKAGNKYLI
710
TITSIDHEKG NVNATLA
Length:717
Mass (Da):82,725
Last modified:January 19, 2010 - v1
Checksum:iF245777DD3CC1644
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP236530 Genomic DNA. Translation: CAX37324.1.
RefSeqiWP_012855467.1. NC_013511.1.

Genome annotation databases

EnsemblBacteriaiCAX37324; CAX37324; MHO_1900.
KEGGimho:MHO_1900.
PATRICi32273495. VBIMycHom120329_0201.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP236530 Genomic DNA. Translation: CAX37324.1.
RefSeqiWP_012855467.1. NC_013511.1.

3D structure databases

ProteinModelPortaliD1J7X7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi347256.MHO_1900.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAX37324; CAX37324; MHO_1900.
KEGGimho:MHO_1900.
PATRICi32273495. VBIMycHom120329_0201.

Phylogenomic databases

HOGENOMiHOG000071119.
KOiK12573.
OMAiLFIHIAD.
OrthoDBiEOG6Q5NRD.

Enzyme and pathway databases

BioCyciMHOM347256:GBZD-207-MONOMER.

Family and domain databases

HAMAPiMF_01895. RNase_R.
InterProiIPR012340. NA-bd_OB-fold.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
IPR022967. S1_dom.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas."
    Pereyre S., Sirand-Pugnet P., Beven L., Charron A., Renaudin H., Barre A., Avenaud P., Jacob D., Couloux A., Barbe V., de Daruvar A., Blanchard A., Bebear C.
    PLoS Genet. 5:E1000677-E1000677(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21Imported.

Entry informationi

Entry nameiD1J7X7_MYCHP
AccessioniPrimary (citable) accession number: D1J7X7
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: July 22, 2015
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.