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D1J7X7 (D1J7X7_MYCHP) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease R HAMAP-Rule MF_01895
Short name=RNase R HAMAP-Rule MF_01895
EC=3.1.13.1 HAMAP-Rule MF_01895
Gene names
Name:vacB EMBL CAX37324.1
Synonyms:rnr HAMAP-Rule MF_01895
Ordered Locus Names:MHO_1900
OrganismMycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21) [Complete proteome] [HAMAP] EMBL CAX37324.1
Taxonomic identifier347256 [NCBI]
Taxonomic lineageBacteria › Tenericutes › Mollicutes › Mycoplasmataceae › Mycoplasma ›

Protein attributes

Sequence length717 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs By similarity. HAMAP-Rule MF_01895

Catalytic activity

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_01895 SAAS SAAS022966

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_01895.

Sequence similarities

Belongs to the RNR ribonuclease family. RNase R subfamily. HAMAP-Rule MF_01895

Contains 1 S1 motif domain. HAMAP-Rule MF_01895 SAAS SAAS022966

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain640 – 71778S1 motif By similarity HAMAP-Rule MF_01895

Sequences

Sequence LengthMass (Da)Tools
D1J7X7 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: F245777DD3CC1644

FASTA71782,725
        10         20         30         40         50         60 
MTYIKNFKNK NNNPKINEEQ VLKCIRESDG ITFIEIAKKL RIPAFLNFEL SEILNNYLSK 

        70         80         90        100        110        120 
KLIDTKSDEK YIAIYFLTKV QKEISITAKR LGFIDFEMQE ESQTKVFSAF LAPFQLKAVL 

       130        140        150        160        170        180 
DKDLLLANIY YYYENGIKKY KGDIIQILNH ARKTIVGTIE KSANKLFFNA YDEKDRAKFE 

       190        200        210        220        230        240 
IINEKECPDI TKLKNSLVSC EILKPNNKKV AIAYKNIIGN INDKEHVIKK IIAQNDVNVN 

       250        260        270        280        290        300 
FPQNLLEYVS SIPSFVSQEE INSRINLIDL MTVTIDGLDT KDFDDAISCY KNEKNNWKLF 

       310        320        330        340        350        360 
IHIADVSYYV KENDLIDNEA LLRGTSIYLP DRVIPMLPVE LSNGICSLNP NEVRACITLE 

       370        380        390        400        410        420 
LEIDKQGNNI SYKIYPSVIK SNYRLTYNEV NDFYSNIKSV PDDVANMLLH ARDLAKIIRS 

       430        440        450        460        470        480 
KKISEGYVDF EIQESKVIMD GTKVVDIKVK EEGESEKLIE DFMVRANETV AQMMTNLKIP 

       490        500        510        520        530        540 
SIYRIHEKPS PEKLTLLQEL FNFCGFKDVK VPYDGEPKSF GEMIAKLKEH KFDDFIKMAL 

       550        560        570        580        590        600 
LRTMQKAIYS SNNIGHFGLA SKAYSHFTSP IRRYPDLLLH RLIRTYIFEK KEITPDLSET 

       610        620        630        640        650        660 
LKQKISQIAL MNSESEKNAM VVERSVVDVR KSEFFENLIN KQFFATLVSI EKFGMFFNID 

       670        680        690        700        710 
EYQTSVLVRF ENLTIPTNKD NDFQASSKNK IYKAGNKYLI TITSIDHEKG NVNATLA

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References

[1]"Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas."
Pereyre S., Sirand-Pugnet P., Beven L., Charron A., Renaudin H., Barre A., Avenaud P., Jacob D., Couloux A., Barbe V., de Daruvar A., Blanchard A., Bebear C.
PLoS Genet. 5:E1000677-E1000677(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FP236530 Genomic DNA. Translation: CAX37324.1.
RefSeqYP_003302727.1. NC_013511.1.

3D structure databases

ProteinModelPortalD1J7X7.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAX37324; CAX37324; MHO_1900.
GeneID8595044.
KEGGmho:MHO_1900.
PATRIC32273495. VBIMycHom120329_0201.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000071119.
KOK12573.
OMACERNAND.

Family and domain databases

HAMAPMF_01895. RNase_R.
InterProIPR022967. RNA-binding_domain_S1.
IPR001900. RNase_II/R.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
[Graphical view]
PfamPF00773. RNB. 1 hit.
[Graphical view]
SMARTSM00955. RNB. 1 hit.
SM00316. S1. 1 hit.
[Graphical view]
TIGRFAMsTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEPS01175. RIBONUCLEASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD1J7X7_MYCHP
AccessionPrimary (citable) accession number: D1J7X7
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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