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D1J7X7

- D1J7X7_MYCHP

UniProt

D1J7X7 - D1J7X7_MYCHP

Protein

Ribonuclease R

Gene

vacB

Organism
Mycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (19 Jan 2010)
      Previous versions | rss
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    Functioni

    3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.UniRule annotation

    Catalytic activityi

    Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. exoribonuclease II activity Source: UniProtKB-HAMAP
    2. RNA binding Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease

    Keywords - Ligandi

    RNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciMHOM347256:GBZD-207-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
    Short name:
    RNase RUniRule annotation
    Gene namesi
    Name:vacBImported
    Synonyms:rnrUniRule annotation
    Ordered Locus Names:MHO_1900Imported
    OrganismiMycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21)Imported
    Taxonomic identifieri347256 [NCBI]
    Taxonomic lineageiBacteriaTenericutesMollicutesMycoplasmataceaeMycoplasma
    ProteomesiUP000002631: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliD1J7X7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini640 – 71778S1 motifUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RNR ribonuclease family. RNase R subfamily.UniRule annotation
    Contains 1 S1 motif domain.UniRule annotation
    Contains S1 motif domain.SAAS annotation
    Contains Smotif domain.SAAS annotation

    Phylogenomic databases

    HOGENOMiHOG000071119.
    KOiK12573.
    OMAiMVRANET.
    OrthoDBiEOG6Q5NRD.

    Family and domain databases

    HAMAPiMF_01895. RNase_R.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR022967. RNA-binding_domain_S1.
    IPR022966. RNase_II/R_CS.
    IPR004476. RNase_II/RNase_R.
    IPR011805. RNase_R.
    [Graphical view]
    SMARTiSM00316. S1. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
    TIGR02063. RNase_R. 1 hit.
    PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D1J7X7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTYIKNFKNK NNNPKINEEQ VLKCIRESDG ITFIEIAKKL RIPAFLNFEL    50
    SEILNNYLSK KLIDTKSDEK YIAIYFLTKV QKEISITAKR LGFIDFEMQE 100
    ESQTKVFSAF LAPFQLKAVL DKDLLLANIY YYYENGIKKY KGDIIQILNH 150
    ARKTIVGTIE KSANKLFFNA YDEKDRAKFE IINEKECPDI TKLKNSLVSC 200
    EILKPNNKKV AIAYKNIIGN INDKEHVIKK IIAQNDVNVN FPQNLLEYVS 250
    SIPSFVSQEE INSRINLIDL MTVTIDGLDT KDFDDAISCY KNEKNNWKLF 300
    IHIADVSYYV KENDLIDNEA LLRGTSIYLP DRVIPMLPVE LSNGICSLNP 350
    NEVRACITLE LEIDKQGNNI SYKIYPSVIK SNYRLTYNEV NDFYSNIKSV 400
    PDDVANMLLH ARDLAKIIRS KKISEGYVDF EIQESKVIMD GTKVVDIKVK 450
    EEGESEKLIE DFMVRANETV AQMMTNLKIP SIYRIHEKPS PEKLTLLQEL 500
    FNFCGFKDVK VPYDGEPKSF GEMIAKLKEH KFDDFIKMAL LRTMQKAIYS 550
    SNNIGHFGLA SKAYSHFTSP IRRYPDLLLH RLIRTYIFEK KEITPDLSET 600
    LKQKISQIAL MNSESEKNAM VVERSVVDVR KSEFFENLIN KQFFATLVSI 650
    EKFGMFFNID EYQTSVLVRF ENLTIPTNKD NDFQASSKNK IYKAGNKYLI 700
    TITSIDHEKG NVNATLA 717
    Length:717
    Mass (Da):82,725
    Last modified:January 19, 2010 - v1
    Checksum:iF245777DD3CC1644
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP236530 Genomic DNA. Translation: CAX37324.1.
    RefSeqiYP_003302727.1. NC_013511.1.

    Genome annotation databases

    EnsemblBacteriaiCAX37324; CAX37324; MHO_1900.
    GeneIDi8595044.
    KEGGimho:MHO_1900.
    PATRICi32273495. VBIMycHom120329_0201.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP236530 Genomic DNA. Translation: CAX37324.1 .
    RefSeqi YP_003302727.1. NC_013511.1.

    3D structure databases

    ProteinModelPortali D1J7X7.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAX37324 ; CAX37324 ; MHO_1900 .
    GeneIDi 8595044.
    KEGGi mho:MHO_1900.
    PATRICi 32273495. VBIMycHom120329_0201.

    Phylogenomic databases

    HOGENOMi HOG000071119.
    KOi K12573.
    OMAi MVRANET.
    OrthoDBi EOG6Q5NRD.

    Enzyme and pathway databases

    BioCyci MHOM347256:GBZD-207-MONOMER.

    Family and domain databases

    HAMAPi MF_01895. RNase_R.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR022967. RNA-binding_domain_S1.
    IPR022966. RNase_II/R_CS.
    IPR004476. RNase_II/RNase_R.
    IPR011805. RNase_R.
    [Graphical view ]
    SMARTi SM00316. S1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
    TIGR02063. RNase_R. 1 hit.
    PROSITEi PS01175. RIBONUCLEASE_II. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas."
      Pereyre S., Sirand-Pugnet P., Beven L., Charron A., Renaudin H., Barre A., Avenaud P., Jacob D., Couloux A., Barbe V., de Daruvar A., Blanchard A., Bebear C.
      PLoS Genet. 5:E1000677-E1000677(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21Imported.

    Entry informationi

    Entry nameiD1J7X7_MYCHP
    AccessioniPrimary (citable) accession number: D1J7X7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 19, 2010
    Last sequence update: January 19, 2010
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3