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D1J7X7

- D1J7X7_MYCHP

UniProt

D1J7X7 - D1J7X7_MYCHP

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Protein
Ribonuclease R
Gene
vacB, rnr, MHO_1900
Organism
Mycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs By similarity.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotations

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-HAMAP
  2. exoribonuclease II activity Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

ExonucleaseUniRule annotationSAAS annotations, Hydrolase, Nuclease

Keywords - Ligandi

RNA-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciMHOM347256:GBZD-207-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
Short name:
RNase RUniRule annotation
Gene namesi
Name:vacBImported
Synonyms:rnrUniRule annotation
Ordered Locus Names:MHO_1900Imported
OrganismiMycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21)Imported
Taxonomic identifieri347256 [NCBI]
Taxonomic lineageiBacteriaTenericutesMollicutesMycoplasmataceaeMycoplasma
ProteomesiUP000002631: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliD1J7X7.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini640 – 71778S1 motif By similarityUniRule annotation
Add
BLAST

Sequence similaritiesi

Contains 1 S1 motif domain.UniRule annotation
Contains S1 motif domain.SAAS annotations
Contains Smotif domain.SAAS annotations

Phylogenomic databases

HOGENOMiHOG000071119.
KOiK12573.
OMAiMVRANET.
OrthoDBiEOG6Q5NRD.

Family and domain databases

HAMAPiMF_01895. RNase_R.
InterProiIPR012340. NA-bd_OB-fold.
IPR022967. RNA-binding_domain_S1.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1J7X7-1 [UniParc]FASTAAdd to Basket

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MTYIKNFKNK NNNPKINEEQ VLKCIRESDG ITFIEIAKKL RIPAFLNFEL    50
SEILNNYLSK KLIDTKSDEK YIAIYFLTKV QKEISITAKR LGFIDFEMQE 100
ESQTKVFSAF LAPFQLKAVL DKDLLLANIY YYYENGIKKY KGDIIQILNH 150
ARKTIVGTIE KSANKLFFNA YDEKDRAKFE IINEKECPDI TKLKNSLVSC 200
EILKPNNKKV AIAYKNIIGN INDKEHVIKK IIAQNDVNVN FPQNLLEYVS 250
SIPSFVSQEE INSRINLIDL MTVTIDGLDT KDFDDAISCY KNEKNNWKLF 300
IHIADVSYYV KENDLIDNEA LLRGTSIYLP DRVIPMLPVE LSNGICSLNP 350
NEVRACITLE LEIDKQGNNI SYKIYPSVIK SNYRLTYNEV NDFYSNIKSV 400
PDDVANMLLH ARDLAKIIRS KKISEGYVDF EIQESKVIMD GTKVVDIKVK 450
EEGESEKLIE DFMVRANETV AQMMTNLKIP SIYRIHEKPS PEKLTLLQEL 500
FNFCGFKDVK VPYDGEPKSF GEMIAKLKEH KFDDFIKMAL LRTMQKAIYS 550
SNNIGHFGLA SKAYSHFTSP IRRYPDLLLH RLIRTYIFEK KEITPDLSET 600
LKQKISQIAL MNSESEKNAM VVERSVVDVR KSEFFENLIN KQFFATLVSI 650
EKFGMFFNID EYQTSVLVRF ENLTIPTNKD NDFQASSKNK IYKAGNKYLI 700
TITSIDHEKG NVNATLA 717
Length:717
Mass (Da):82,725
Last modified:January 19, 2010 - v1
Checksum:iF245777DD3CC1644
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP236530 Genomic DNA. Translation: CAX37324.1.
RefSeqiYP_003302727.1. NC_013511.1.

Genome annotation databases

EnsemblBacteriaiCAX37324; CAX37324; MHO_1900.
GeneIDi8595044.
KEGGimho:MHO_1900.
PATRICi32273495. VBIMycHom120329_0201.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP236530 Genomic DNA. Translation: CAX37324.1 .
RefSeqi YP_003302727.1. NC_013511.1.

3D structure databases

ProteinModelPortali D1J7X7.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAX37324 ; CAX37324 ; MHO_1900 .
GeneIDi 8595044.
KEGGi mho:MHO_1900.
PATRICi 32273495. VBIMycHom120329_0201.

Phylogenomic databases

HOGENOMi HOG000071119.
KOi K12573.
OMAi MVRANET.
OrthoDBi EOG6Q5NRD.

Enzyme and pathway databases

BioCyci MHOM347256:GBZD-207-MONOMER.

Family and domain databases

HAMAPi MF_01895. RNase_R.
InterProi IPR012340. NA-bd_OB-fold.
IPR022967. RNA-binding_domain_S1.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEi PS01175. RIBONUCLEASE_II. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas."
    Pereyre S., Sirand-Pugnet P., Beven L., Charron A., Renaudin H., Barre A., Avenaud P., Jacob D., Couloux A., Barbe V., de Daruvar A., Blanchard A., Bebear C.
    PLoS Genet. 5:E1000677-E1000677(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21.

Entry informationi

Entry nameiD1J7X7_MYCHP
AccessioniPrimary (citable) accession number: D1J7X7
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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