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D1J7X7

- D1J7X7_MYCHP

UniProt

D1J7X7 - D1J7X7_MYCHP

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Protein

Ribonuclease R

Gene

vacB

Organism
Mycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. exoribonuclease II activity Source: UniProtKB-HAMAP
  2. RNA binding Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease

Keywords - Ligandi

RNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciMHOM347256:GBZD-207-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
Short name:
RNase RUniRule annotation
Gene namesi
Name:vacBImported
Synonyms:rnrUniRule annotation
Ordered Locus Names:MHO_1900Imported
OrganismiMycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21)Imported
Taxonomic identifieri347256 [NCBI]
Taxonomic lineageiBacteriaTenericutesMollicutesMycoplasmataceaeMycoplasma
ProteomesiUP000002631: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliD1J7X7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini640 – 71778S1 motifUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RNR ribonuclease family. RNase R subfamily.UniRule annotation
Contains 1 S1 motif domain.UniRule annotation
Contains S1 motif domain.SAAS annotation
Contains Smotif domain.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000071119.
KOiK12573.
OMAiMVRANET.
OrthoDBiEOG6Q5NRD.

Family and domain databases

HAMAPiMF_01895. RNase_R.
InterProiIPR012340. NA-bd_OB-fold.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
IPR022967. S1_dom.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1J7X7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTYIKNFKNK NNNPKINEEQ VLKCIRESDG ITFIEIAKKL RIPAFLNFEL
60 70 80 90 100
SEILNNYLSK KLIDTKSDEK YIAIYFLTKV QKEISITAKR LGFIDFEMQE
110 120 130 140 150
ESQTKVFSAF LAPFQLKAVL DKDLLLANIY YYYENGIKKY KGDIIQILNH
160 170 180 190 200
ARKTIVGTIE KSANKLFFNA YDEKDRAKFE IINEKECPDI TKLKNSLVSC
210 220 230 240 250
EILKPNNKKV AIAYKNIIGN INDKEHVIKK IIAQNDVNVN FPQNLLEYVS
260 270 280 290 300
SIPSFVSQEE INSRINLIDL MTVTIDGLDT KDFDDAISCY KNEKNNWKLF
310 320 330 340 350
IHIADVSYYV KENDLIDNEA LLRGTSIYLP DRVIPMLPVE LSNGICSLNP
360 370 380 390 400
NEVRACITLE LEIDKQGNNI SYKIYPSVIK SNYRLTYNEV NDFYSNIKSV
410 420 430 440 450
PDDVANMLLH ARDLAKIIRS KKISEGYVDF EIQESKVIMD GTKVVDIKVK
460 470 480 490 500
EEGESEKLIE DFMVRANETV AQMMTNLKIP SIYRIHEKPS PEKLTLLQEL
510 520 530 540 550
FNFCGFKDVK VPYDGEPKSF GEMIAKLKEH KFDDFIKMAL LRTMQKAIYS
560 570 580 590 600
SNNIGHFGLA SKAYSHFTSP IRRYPDLLLH RLIRTYIFEK KEITPDLSET
610 620 630 640 650
LKQKISQIAL MNSESEKNAM VVERSVVDVR KSEFFENLIN KQFFATLVSI
660 670 680 690 700
EKFGMFFNID EYQTSVLVRF ENLTIPTNKD NDFQASSKNK IYKAGNKYLI
710
TITSIDHEKG NVNATLA
Length:717
Mass (Da):82,725
Last modified:January 19, 2010 - v1
Checksum:iF245777DD3CC1644
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP236530 Genomic DNA. Translation: CAX37324.1.
RefSeqiWP_012855467.1. NC_013511.1.
YP_003302727.1. NC_013511.1.

Genome annotation databases

EnsemblBacteriaiCAX37324; CAX37324; MHO_1900.
GeneIDi8595044.
KEGGimho:MHO_1900.
PATRICi32273495. VBIMycHom120329_0201.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP236530 Genomic DNA. Translation: CAX37324.1 .
RefSeqi WP_012855467.1. NC_013511.1.
YP_003302727.1. NC_013511.1.

3D structure databases

ProteinModelPortali D1J7X7.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAX37324 ; CAX37324 ; MHO_1900 .
GeneIDi 8595044.
KEGGi mho:MHO_1900.
PATRICi 32273495. VBIMycHom120329_0201.

Phylogenomic databases

HOGENOMi HOG000071119.
KOi K12573.
OMAi MVRANET.
OrthoDBi EOG6Q5NRD.

Enzyme and pathway databases

BioCyci MHOM347256:GBZD-207-MONOMER.

Family and domain databases

HAMAPi MF_01895. RNase_R.
InterProi IPR012340. NA-bd_OB-fold.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
IPR022967. S1_dom.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEi PS01175. RIBONUCLEASE_II. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas."
    Pereyre S., Sirand-Pugnet P., Beven L., Charron A., Renaudin H., Barre A., Avenaud P., Jacob D., Couloux A., Barbe V., de Daruvar A., Blanchard A., Bebear C.
    PLoS Genet. 5:E1000677-E1000677(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21Imported.

Entry informationi

Entry nameiD1J7X7_MYCHP
AccessioniPrimary (citable) accession number: D1J7X7
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3