D1CEQ3 (D1CEQ3_THET1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L21 HAMAP-Rule MF_01363 RuleBase RU000562

Gene names

Name:	rplU HAMAP-Rule MF_01363
Ordered Locus Names:	Tter_0488

Organism

Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) [Complete proteome] [HAMAP] EMBL ACZ41409.1

Taxonomic identifier

525904 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › unclassified Bacteria › Thermobaculum › Thermobaculum terrenum

Protein attributes

Sequence length	103 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein binds to 23S rRNA in the presence of protein L20 By similarity. HAMAP-Rule MF_01363 RuleBase RU000562 SAAS SAAS018258
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L20 By similarity. HAMAP-Rule MF_01363 SAAS SAAS018258
Sequence similarities	Belongs to the ribosomal protein L21P family. HAMAP-Rule MF_01363 RuleBase RU000562

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_01363 RuleBase RU000562 SAAS SAAS018258
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01363 RuleBase RU000562 SAAS SAAS018258 EMBL ACZ41409.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D1CEQ3 [UniParc]. Last modified January 19, 2010. Version 1. Checksum: 50E1EF3820426742	FASTA	103	11,442
	10 20 30 40 50 60 MYAVIRTGGK QYKVAVGDQL SVEKLPAEAG QAVQFDDVLL VADGENVKVG TPTVEGALVK 70 80 90 100 ATVLDQERGP KIRIFKFKAK KRYRRRAGHK QNYTRVKIDE IVA

References

[1]

"Complete genome sequence of Thermobaculum terrenum type strain (YNP1T)." Kiss H., Cleland D., Lapidus A., Lucas S., Glavina Del Rio T., Nolan M., Tice H., Han C., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Ovchinnikova G., Pati A., Chen A., Palaniappan K., Land M. , Hauser L., Chang Y., Jeffries C., Lu M., Brettin T., Detter J., Goker M., Tindall B., Beck B., McDermott T., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H., Cheng J. Stand. Genomic Sci. 3:153-162(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-798 / YNP1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001825 Genomic DNA. Translation: ACZ41409.1.
RefSeq	YP_003322231.1. NC_013525.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACZ41409; ACZ41409; Tter_0488.
GeneID	8644952.
KEGG	ttr:Tter_0488.
PATRIC	32501024. VBITheTer68767_0520.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036265.
KO	K02888.
OMA	KVTIIKF.
Family and domain databases
HAMAP	MF_01363. Ribosomal_L21.
InterPro	IPR001787. Ribosomal_L21. IPR018258. Ribosomal_L21_CS. [Graphical view]
PANTHER	PTHR21349. PTHR21349. 1 hit.
Pfam	PF00829. Ribosomal_L21p. 1 hit. [Graphical view]
TIGRFAMs	TIGR00061. L21. 1 hit.
PROSITE	PS01169. RIBOSOMAL_L21. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D1CEQ3_THET1

Accession

Primary (citable) accession number: D1CEQ3

Entry history

Integrated into UniProtKB/TrEMBL:	January 19, 2010
Last sequence update:	January 19, 2010
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)