D1C9J4 (D1C9J4_SPHTD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Ordered Locus Names:

Sthe_3087

Organism

Sphaerobacter thermophilus (strain DSM 20745 / S 6022) [Complete proteome] [HAMAP]

Taxonomic identifier

479434 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Chloroflexi › Thermomicrobia › Sphaerobacteridae › Sphaerobacterales › Sphaerobacterineae › Sphaerobacteraceae › Sphaerobacter › Sphaerobacter thermophilus

Protein attributes

Sequence length	408 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL ACZ40487.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D1C9J4 [UniParc]. Last modified January 19, 2010. Version 1. Checksum: 8B8E0701C04629F4	FASTA	408	42,280
	10 20 30 40 50 60 MIEPFAARLA AAQGGAHALI DLDAFAGNIA YVRSQLPEGA EVIAVIKANA YGHGLVPCGR 70 80 90 100 110 120 AALAAGASRL AVARIEEALL LRAAGVVAPI LVLSPANPAL ARQAAESGIA LAVGSATGLN 130 140 150 160 170 180 RLLDALGDDL PPLPVHLKVD TGMHRFGVEP EGVVELARAL AREPRVRVEG VFTHFATADA 190 200 210 220 230 240 ADDRVLQEQT RRFAAAVQAL AAAGLQPPLV HMANSAAILR GVVEIPAPRA TIAVRAGLIL 250 260 270 280 290 300 YGLNPSRELP LPAPIRPVLR LVTRVGQVFT VPPGEGISYG WSYIAERPIR CANLPIGYAD 310 320 330 340 350 360 GLVRLLSNQG WAVVGGAVCP IRGRICMDQT VIEVEAAPDV AEGDEAVLLS DGRDGAMTAD 370 380 390 400 QAAALAGTIN YEIVSALAAR IPRVYLRGGR PVAVLDLLGL VEDPSAAC

References

[1]

"The complete chromosome 2 of Sphaerobacter thermophilus DSM 20745." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., LaButti K.M., Clum A., Sun H.I., Brettin T., Detter J.C. , Han C., Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Steenblock K., Schneider S., Pukall R., Goeker M., Klenk H.P., Eisen J.A. Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 20745 / S 6022.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001824 Genomic DNA. Translation: ACZ40487.1.
RefSeq	YP_003321309.1. NC_013524.1.
3D structure databases
ProteinModelPortal	D1C9J4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACZ40487; ACZ40487; Sthe_3087.
GeneID	8647026.
KEGG	sti:Sthe_3087.
PATRIC	32429012. VBISphThe120955_3112.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
OMA	GSMFTAD.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D1C9J4_SPHTD

Accession

Primary (citable) accession number: D1C9J4

Entry history

Integrated into UniProtKB/TrEMBL:	January 19, 2010
Last sequence update:	January 19, 2010
Last modified:	May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)