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Protein
Submitted name:

DNA ligase I, ATP-dependent Dnl1

Gene

Xcel_2642

Organism
Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA recombination Source: InterPro
  3. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXCEL446471:GHA2-2691-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase I, ATP-dependent Dnl1Imported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Xcel_2642Imported
OrganismiXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)Imported
Taxonomic identifieri446471 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeXylanimonas
ProteomesiUP000002255 Componenti: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000036008.
KOiK10747.
OMAiGRPRPFQ.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 2 hits.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1BX88-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPPRSAFRGA RPHIHGGGAV SRGPVSAAGG SIDSVLFHDV AVTSAGVAAT
60 70 80 90 100
RSRLAKRELL AAALRAAAHG GMTGGDATAD GAAAGEGMAG GAATGGATTG
110 120 130 140 150
GPGSDDGRAG EEVDVVATFL SGRVRQRRTG VGWRSLTSLP APASAPTLTP
160 170 180 190 200
LDVDAALQTM ADAEGPGSAA VRGEAVRRLF AAATQDEQTF LRGLIVGELR
210 220 230 240 250
QGALDSLLLD AVAAAADVPL AAVRRAAMFS APSGPIARAA LTGGAAALAA
260 270 280 290 300
FRLEPGRPVR PMLASPAPDV AAALAGIGGP VAVEAKIDGI RVQLHKHGND
310 320 330 340 350
VAVYTRSLDD VTERLPELVA LLRSLPVATA VLDGEAIALG ADGRPLAFQD
360 370 380 390 400
TAARTGSHDA DATGRVPLTA FLFDALHLAG RDLVDAPESE RFAALERVAP
410 420 430 440 450
PSALVRRIVT ADPDEATAFF AEVLASGHEG VVVKDLAAPY DAGRRGGAWV
460 470 480 490 500
KVKPRHTLDL VVLAVERGSG RRSGWLSNIH LGARVPGAGP DSADGWVMLG
510 520 530 540 550
KTFKGMSDEM LAWQTARFTE LADGPADGWV VRVRPEQVVE IAFDGVQRST
560 570 580 590
RYPGGVALRF ARVLRYRDDK PAAEADTIDA VRAIAGGNAS GG
Length:592
Mass (Da):60,486
Last modified:January 18, 2010 - v1
Checksum:i0B5305E500D788E3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001821 Genomic DNA. Translation: ACZ31656.1.
RefSeqiYP_003327214.1. NC_013530.1.

Genome annotation databases

EnsemblBacteriaiACZ31656; ACZ31656; Xcel_2642.
KEGGixce:Xcel_2642.
PATRICi32554339. VBIXylCel24446_2688.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001821 Genomic DNA. Translation: ACZ31656.1.
RefSeqiYP_003327214.1. NC_013530.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACZ31656; ACZ31656; Xcel_2642.
KEGGixce:Xcel_2642.
PATRICi32554339. VBIXylCel24446_2688.

Phylogenomic databases

HOGENOMiHOG000036008.
KOiK10747.
OMAiGRPRPFQ.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciXCEL446471:GHA2-2691-MONOMER.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 2 hits.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07Imported.

Entry informationi

Entry nameiD1BX88_XYLCX
AccessioniPrimary (citable) accession number: D1BX88
Entry historyi
Integrated into UniProtKB/TrEMBL: January 18, 2010
Last sequence update: January 18, 2010
Last modified: March 31, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.