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D1BX88

- D1BX88_XYLCX

UniProt

D1BX88 - D1BX88_XYLCX

Protein
Submitted name:

DNA ligase I, ATP-dependent Dnl1

Gene

Xcel_2642

Organism
Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (19 Jan 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro
    3. DNA replication Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciXCEL446471:GHA2-2691-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase I, ATP-dependent Dnl1Imported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:Xcel_2642Imported
    OrganismiXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)Imported
    Taxonomic identifieri446471 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeXylanimonas
    ProteomesiUP000002255: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000036008.
    KOiK01971.
    OMAiARVQVHK.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 2 hits.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D1BX88-1 [UniParc]FASTAAdd to Basket

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    MPPRSAFRGA RPHIHGGGAV SRGPVSAAGG SIDSVLFHDV AVTSAGVAAT    50
    RSRLAKRELL AAALRAAAHG GMTGGDATAD GAAAGEGMAG GAATGGATTG 100
    GPGSDDGRAG EEVDVVATFL SGRVRQRRTG VGWRSLTSLP APASAPTLTP 150
    LDVDAALQTM ADAEGPGSAA VRGEAVRRLF AAATQDEQTF LRGLIVGELR 200
    QGALDSLLLD AVAAAADVPL AAVRRAAMFS APSGPIARAA LTGGAAALAA 250
    FRLEPGRPVR PMLASPAPDV AAALAGIGGP VAVEAKIDGI RVQLHKHGND 300
    VAVYTRSLDD VTERLPELVA LLRSLPVATA VLDGEAIALG ADGRPLAFQD 350
    TAARTGSHDA DATGRVPLTA FLFDALHLAG RDLVDAPESE RFAALERVAP 400
    PSALVRRIVT ADPDEATAFF AEVLASGHEG VVVKDLAAPY DAGRRGGAWV 450
    KVKPRHTLDL VVLAVERGSG RRSGWLSNIH LGARVPGAGP DSADGWVMLG 500
    KTFKGMSDEM LAWQTARFTE LADGPADGWV VRVRPEQVVE IAFDGVQRST 550
    RYPGGVALRF ARVLRYRDDK PAAEADTIDA VRAIAGGNAS GG 592
    Length:592
    Mass (Da):60,486
    Last modified:January 19, 2010 - v1
    Checksum:i0B5305E500D788E3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001821 Genomic DNA. Translation: ACZ31656.1.
    RefSeqiWP_012879398.1. NC_013530.1.
    YP_003327214.1. NC_013530.1.

    Genome annotation databases

    EnsemblBacteriaiACZ31656; ACZ31656; Xcel_2642.
    GeneIDi8650185.
    KEGGixce:Xcel_2642.
    PATRICi32554339. VBIXylCel24446_2688.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001821 Genomic DNA. Translation: ACZ31656.1 .
    RefSeqi WP_012879398.1. NC_013530.1.
    YP_003327214.1. NC_013530.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACZ31656 ; ACZ31656 ; Xcel_2642 .
    GeneIDi 8650185.
    KEGGi xce:Xcel_2642.
    PATRICi 32554339. VBIXylCel24446_2688.

    Phylogenomic databases

    HOGENOMi HOG000036008.
    KOi K01971.
    OMAi ARVQVHK.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci XCEL446471:GHA2-2691-MONOMER.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 2 hits.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07Imported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07Imported.

    Entry informationi

    Entry nameiD1BX88_XYLCX
    AccessioniPrimary (citable) accession number: D1BX88
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 19, 2010
    Last sequence update: January 19, 2010
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3