D1BX88 (D1BX88_XYLCX) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase I, ATP-dependent Dnl1 EMBL ACZ31656.1
EC=6.5.1.1 EMBL ACZ31656.1

Gene names

Ordered Locus Names:

Xcel_2642 EMBL ACZ31656.1

Organism

Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) [Complete proteome] [HAMAP] EMBL ACZ31656.1

Taxonomic identifier

446471 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Promicromonosporaceae › Xylanimonas › Xylanimonas cellulosilytica

Protein attributes

Sequence length	592 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Ontologies

Keywords
Molecular function	Ligase EMBL ACZ31656.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro DNA replication Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D1BX88 [UniParc]. Last modified January 19, 2010. Version 1. Checksum: 0B5305E500D788E3	FASTA	592	60,486
	10 20 30 40 50 60 MPPRSAFRGA RPHIHGGGAV SRGPVSAAGG SIDSVLFHDV AVTSAGVAAT RSRLAKRELL 70 80 90 100 110 120 AAALRAAAHG GMTGGDATAD GAAAGEGMAG GAATGGATTG GPGSDDGRAG EEVDVVATFL 130 140 150 160 170 180 SGRVRQRRTG VGWRSLTSLP APASAPTLTP LDVDAALQTM ADAEGPGSAA VRGEAVRRLF 190 200 210 220 230 240 AAATQDEQTF LRGLIVGELR QGALDSLLLD AVAAAADVPL AAVRRAAMFS APSGPIARAA 250 260 270 280 290 300 LTGGAAALAA FRLEPGRPVR PMLASPAPDV AAALAGIGGP VAVEAKIDGI RVQLHKHGND 310 320 330 340 350 360 VAVYTRSLDD VTERLPELVA LLRSLPVATA VLDGEAIALG ADGRPLAFQD TAARTGSHDA 370 380 390 400 410 420 DATGRVPLTA FLFDALHLAG RDLVDAPESE RFAALERVAP PSALVRRIVT ADPDEATAFF 430 440 450 460 470 480 AEVLASGHEG VVVKDLAAPY DAGRRGGAWV KVKPRHTLDL VVLAVERGSG RRSGWLSNIH 490 500 510 520 530 540 LGARVPGAGP DSADGWVMLG KTFKGMSDEM LAWQTARFTE LADGPADGWV VRVRPEQVVE 550 560 570 580 590 IAFDGVQRST RYPGGVALRF ARVLRYRDDK PAAEADTIDA VRAIAGGNAS GG

References

[1]

"The complete chromosome of Xylanimonas cellulosilytica DSM 15894." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Foster B., Clum A., Brettin T., Detter J.C., Han C. , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Gehrich-Schroeter G., Schneider S., Pukall S.R., Klenk H.P., Eisen J.A. Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001821 Genomic DNA. Translation: ACZ31656.1.
RefSeq	YP_003327214.1. NC_013530.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACZ31656; ACZ31656; Xcel_2642.
GeneID	8650185.
KEGG	xce:Xcel_2642.
PATRIC	32554339. VBIXylCel24446_2688.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036008.
KO	K01971.
OMA	ARVQVHK.
Enzyme and pathway databases
BioCyc	XCEL446471:GHA2-2691-MONOMER.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 2 hits.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D1BX88_XYLCX

Accession

Primary (citable) accession number: D1BX88

Entry history

Integrated into UniProtKB/TrEMBL:	January 19, 2010
Last sequence update:	January 19, 2010
Last modified:	May 29, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)