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D1BX88

- D1BX88_XYLCX

UniProt

D1BX88 - D1BX88_XYLCX

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Protein
Submitted name:

DNA ligase I, ATP-dependent Dnl1

Gene
Xcel_2642
Organism
Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
  3. DNA replication Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXCEL446471:GHA2-2691-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase I, ATP-dependent Dnl1Imported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Xcel_2642Imported
OrganismiXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)Imported
Taxonomic identifieri446471 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeXylanimonas
ProteomesiUP000002255: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000036008.
KOiK01971.
OMAiARVQVHK.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 2 hits.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1BX88-1 [UniParc]FASTAAdd to Basket

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MPPRSAFRGA RPHIHGGGAV SRGPVSAAGG SIDSVLFHDV AVTSAGVAAT    50
RSRLAKRELL AAALRAAAHG GMTGGDATAD GAAAGEGMAG GAATGGATTG 100
GPGSDDGRAG EEVDVVATFL SGRVRQRRTG VGWRSLTSLP APASAPTLTP 150
LDVDAALQTM ADAEGPGSAA VRGEAVRRLF AAATQDEQTF LRGLIVGELR 200
QGALDSLLLD AVAAAADVPL AAVRRAAMFS APSGPIARAA LTGGAAALAA 250
FRLEPGRPVR PMLASPAPDV AAALAGIGGP VAVEAKIDGI RVQLHKHGND 300
VAVYTRSLDD VTERLPELVA LLRSLPVATA VLDGEAIALG ADGRPLAFQD 350
TAARTGSHDA DATGRVPLTA FLFDALHLAG RDLVDAPESE RFAALERVAP 400
PSALVRRIVT ADPDEATAFF AEVLASGHEG VVVKDLAAPY DAGRRGGAWV 450
KVKPRHTLDL VVLAVERGSG RRSGWLSNIH LGARVPGAGP DSADGWVMLG 500
KTFKGMSDEM LAWQTARFTE LADGPADGWV VRVRPEQVVE IAFDGVQRST 550
RYPGGVALRF ARVLRYRDDK PAAEADTIDA VRAIAGGNAS GG 592
Length:592
Mass (Da):60,486
Last modified:January 19, 2010 - v1
Checksum:i0B5305E500D788E3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001821 Genomic DNA. Translation: ACZ31656.1.
RefSeqiWP_012879398.1. NC_013530.1.
YP_003327214.1. NC_013530.1.

Genome annotation databases

EnsemblBacteriaiACZ31656; ACZ31656; Xcel_2642.
GeneIDi8650185.
KEGGixce:Xcel_2642.
PATRICi32554339. VBIXylCel24446_2688.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001821 Genomic DNA. Translation: ACZ31656.1 .
RefSeqi WP_012879398.1. NC_013530.1.
YP_003327214.1. NC_013530.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACZ31656 ; ACZ31656 ; Xcel_2642 .
GeneIDi 8650185.
KEGGi xce:Xcel_2642.
PATRICi 32554339. VBIXylCel24446_2688.

Phylogenomic databases

HOGENOMi HOG000036008.
KOi K01971.
OMAi ARVQVHK.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci XCEL446471:GHA2-2691-MONOMER.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 2 hits.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07.

Entry informationi

Entry nameiD1BX88_XYLCX
AccessioniPrimary (citable) accession number: D1BX88
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: September 3, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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