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D1BWD7 (D1BWD7_XYLCX) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase HAMAP MF_00123
EC=6.1.1.19 HAMAP MF_00123
Alternative name(s):
Arginyl-tRNA synthetase HAMAP MF_00123
Gene names
Name:argS HAMAP MF_00123
Ordered Locus Names:Xcel_2467
OrganismXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) [Complete proteome] [HAMAP]
Taxonomic identifier446471 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Promicromonosporaceae › Xylanimonas

Protein attributes

Sequence length566 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP MF_00123

Subunit structure

Monomer By similarity. HAMAP MF_00123

Subcellular location

Cytoplasm By similarity HAMAP MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP MF_00123 RuleBase RU003489

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2222 Potential EMBL ACZ31482.1
Chain23 – 566544 Potential EMBL ACZ31482.1
PRO_5000537375

Regions

Motif132 – 14211"HIGH" region By similarity HAMAP MF_00123

Sequences

Sequence LengthMass (Da)Tools
D1BWD7 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: CCF1974320966105

FASTA56660,634
        10         20         30         40         50         60 
MTPDELSGAL SAALASAVAD GALALDPAAV PASVHVERPR QREHGDWATN VALQLAKKAG 

        70         80         90        100        110        120 
TNPRALAEVL ASRLASVSGI KQVDIAGPGF LNITLDAAAA GELARSIVET GATYGHNQAE 

       130        140        150        160        170        180 
AGKHINLEFV SANPTGPLHI GGVRWAAVGD SLARVLEASG AQVTREYYFN DHGAQIDRFA 

       190        200        210        220        230        240 
RSLLAAARGE AAPEDGYGGS YIREIADAVT AQALAAGEPA PATLPDGEAQ EAFRARGVQM 

       250        260        270        280        290        300 
MFAEVKTSLH DFGVDFDVFF HEDSLHESGA VERAVARLRE LGHIFEADGA TWLRTTDFGD 

       310        320        330        340        350        360 
DKDRVVIKRD GEAAYIAGDI AYYLDKRERG ADEAIYMLGA DHHGYVGRMM AICAAFGDTP 

       370        380        390        400        410        420 
GVTMQILIGQ LVNLVKDGEP VRMSKRAGNI ITIDDLVDAV GVDAARYSLA RFAADSTIDL 

       430        440        450        460        470        480 
DLDLLTSQKN ENPVYYVQYA HSRTAAVDRN AAERGVARAD GFEPSLLDHP TEAVLLGRLA 

       490        500        510        520        530        540 
EFPRVVGEAA ALREPHRVAR YLEALAGDYH SWYQAKDADG AQRRVLPYPD EPVTDTHRTR 

       550        560 
LWLNDAVRQV LANGLGLLGV SAPERM

« Hide

References

[1]"The complete chromosome of Xylanimonas cellulosilytica DSM 15894."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Foster B., Clum A., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Gehrich-Schroeter G., Schneider S., Pukall S.R., Klenk H.P., Eisen J.A.
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001821 Genomic DNA. Translation: ACZ31482.1.
RefSeqYP_003327040.1. NC_013530.1.

3D structure databases

ProteinModelPortalD1BWD7.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8650009.
GenomeReviewsGene locus Xcel_2467 in contig CP001821_GR.
KEGGxce:Xcel_2467.
PATRIC32553975. VBIXylCel24446_2507.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAFDVYFHE.

Family and domain databases

HAMAPMF_00123. Arg_tRNA_synth.
[Tree]
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-synth_Ia.
IPR015945. Arg-tRNA-synth_Ia_core.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
Gene3DG3DSA:3.30.1360.70. Arg-tRNA-synth_Ic_N. 1 hit.
G3DSA:3.40.50.620. Rossmann-like_a/b/a_fold. 1 hit.
KOK01887.
PANTHERPTHR11956. Arg_tRNA-synt_1c. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF55190. Arg-tRNA-synth_Ic_N. 1 hit.
SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMsTIGR00456. ArgS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD1BWD7_XYLCX
AccessionPrimary (citable) accession number: D1BWD7
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: January 25, 2012
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info