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D1BVH1 (D1BVH1_XYLCX) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase HAMAP MF_00519
EC=5.3.1.4 HAMAP MF_00519
Gene names
Name:araA HAMAP MF_00519
Ordered Locus Names:Xcel_0403
OrganismXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) [Complete proteome] [HAMAP]
Taxonomic identifier446471 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Promicromonosporaceae › Xylanimonas

Protein attributes

Sequence length503 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519 SAAS SAAS003762

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519 SAAS SAAS003762

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519 SAAS SAAS003762

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519 SAAS SAAS003762

Sequence similarities

Belongs to the arabinose isomerase family. HAMAP MF_00519

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding3071Manganese By similarity HAMAP MF_00519
Metal binding3341Manganese By similarity HAMAP MF_00519
Metal binding3511Manganese By similarity HAMAP MF_00519
Metal binding4511Manganese By similarity HAMAP MF_00519

Sequences

Sequence LengthMass (Da)Tools
D1BVH1 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 6506C7FF538ED97D

FASTA50354,980
        10         20         30         40         50         60 
MSKPYADREV WFFTGSQDLY GEETLRQVAE QSQEVAAALD AAADVPARIV WKPVLKDAAS 

        70         80         90        100        110        120 
IRRAMLDANA DDRVLGVITW MHTFSPAKMW ITGLDALRKP LLHLHTQANV ELPWDTIDFD 

       130        140        150        160        170        180 
FMNLNQAAHG DREYAYIAAR LGVARTTVVG HVSNPAVQQR VGTWVRGAAG WAATHELTLA 

       190        200        210        220        230        240 
RFGDNMRNVA VTEGDKTEAE LRFGVTVNTW GVNDLVAAVD DVSDADVDAL VAEYEELYDV 

       250        260        270        280        290        300 
VPELRKDGER HESLRYAARQ EIALLNFLES VGAKAFTTNF EDLGDLRQLP GLAVQRLMAA 

       310        320        330        340        350        360 
GYGFGAEGDW KTAVLVRAAK VMGEGLPGGA SLMEDYTYDL TPGSELILGA HMLEICPSLT 

       370        380        390        400        410        420 
TAKPRVEIHP LGIGGKEDPV RMVFNADAVD GAVVVSLADM RDRFRLTANV VDVVTPPADL 

       430        440        450        460        470        480 
PHLPVARAVW KPRPSFAVSA EAWLTAGGAH HTVMSTAAGI EAFEVFAEIA RVELLVIDED 

       490        500 
TTRRGFKDQV KWNAAYHRLA QGL

« Hide

References

[1]"The complete chromosome of Xylanimonas cellulosilytica DSM 15894."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Foster B., Clum A., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Gehrich-Schroeter G., Schneider S., Pukall S.R., Klenk H.P., Eisen J.A.
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001821 Genomic DNA. Translation: ACZ29442.1.
RefSeqYP_003325000.1. NC_013530.1.

3D structure databases

ProteinModelPortalD1BVH1.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8647906.
GenomeReviewsGene locus Xcel_0403 in contig CP001821_GR.
KEGGxce:Xcel_0403.
PATRIC32549731. VBIXylCel24446_0421.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAEVCPTIA.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD1BVH1_XYLCX
AccessionPrimary (citable) accession number: D1BVH1
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: December 14, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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