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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Xcel_2233

Organism
Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciXCEL446471:GHA2-2274-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Xcel_2233Imported
OrganismiXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)Imported
Taxonomic identifieri446471 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeXylanimonas
ProteomesiUP000002255 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1BV12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGAPTTVTVD GHRLQLTNLD KVLYPATGTT KGEVIDYLAR IAPVLLPHAR
60 70 80 90 100
RRPATRKRWP DGVEGQVFFQ KNADRSTPSW VRTHRIQHKT SANDYVLVDD
110 120 130 140 150
VATLTWLGQT ASLELHVPQW QVGRTGTHLP PDRLVLDLDP GEGAGLPECA
160 170 180 190 200
EVARLARAIL QGMGLEPLPV TSGSKGIHLY AALSAGSSPE GAKPSSAEQI
210 220 230 240 250
TDVAHELARY LEAEHPDLVV SDMKKSLRGG KVLVDWSQNN GAKTTIAPYS
260 270 280 290 300
LRGRTRPTVA APRTWAELDD PDLRQLSYEE VLDRVARDGD LLAGLTAGHL
310 320 330 340 350
SQLEPTPAHL ARFERLATYN AKRDPARTPE PFDTAPPAPV VEPVETTPPV
360 370 380 390 400
GGVSTGSTTG VGSTIGVGST TGVGAPTFVI QEHHARRLHW DFRLERDGVL
410 420 430 440 450
VSWALPKGEP TDPGTNHLAV QTEDHPLAYG GFEGTIPNGE YGAGEVTIWD
460 470 480 490 500
SGTYETEKWR DGKEVIAVLH SERRGTRRLA LIRTGRAEGD NQWLIHRTKA
510 520 530 540 550
QPAEDVASPA PVVEPVETTT PTRSTAEVAV RLEPMLASAA QPAEVRALEA
560 570 580 590 600
DGESGSHDWV FEMKWDGYRT LAVVEPGPDG TRAIRLTSRT GQDFTRTYPE
610 620 630 640 650
LAPLAAQVTG ELPVVLDAEI VALDAAGRPD FRRLQQHAGN VELMVFDVLQ
660 670 680 690 700
VGDRSLLHTP YDERRTVLAD VLDARRPVHL PAAFDGDLTA ALETSRRLRL
710 720 730 740 750
EGVMAKRRES TYQPGRRTRQ WLKLKHTAVQ EVVVVGWRPL RAGETDEDPR
760 770 780 790 800
YAGGLLLAVP ADDGALRYVG RVGTGFSDAE RRDVATRLAA VERKTPPLDG
810 820 830 840 850
VPRPDAAHTR WVTPRLVGEV EFAEWTGDPT DDPEARLRAA RWRGWRPDKE

PADVVVEP
Length:858
Mass (Da):93,785
Last modified:January 19, 2010 - v1
Checksum:i21E54D43E8EDAF8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001821 Genomic DNA. Translation: ACZ31251.1.
RefSeqiWP_012878993.1. NC_013530.1.
YP_003326809.1. NC_013530.1.

Genome annotation databases

EnsemblBacteriaiACZ31251; ACZ31251; Xcel_2233.
KEGGixce:Xcel_2233.
PATRICi32553497. VBIXylCel24446_2276.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001821 Genomic DNA. Translation: ACZ31251.1.
RefSeqiWP_012878993.1. NC_013530.1.
YP_003326809.1. NC_013530.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACZ31251; ACZ31251; Xcel_2233.
KEGGixce:Xcel_2233.
PATRICi32553497. VBIXylCel24446_2276.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciXCEL446471:GHA2-2274-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07Imported.

Entry informationi

Entry nameiD1BV12_XYLCX
AccessioniPrimary (citable) accession number: D1BV12
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: April 29, 2015
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.