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D1BV12

- D1BV12_XYLCX

UniProt

D1BV12 - D1BV12_XYLCX

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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene
Xcel_2233
Organism
Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciXCEL446471:GHA2-2274-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Xcel_2233Imported
OrganismiXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)Imported
Taxonomic identifieri446471 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeXylanimonas
ProteomesiUP000002255: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1BV12-1 [UniParc]FASTAAdd to Basket

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MGAPTTVTVD GHRLQLTNLD KVLYPATGTT KGEVIDYLAR IAPVLLPHAR    50
RRPATRKRWP DGVEGQVFFQ KNADRSTPSW VRTHRIQHKT SANDYVLVDD 100
VATLTWLGQT ASLELHVPQW QVGRTGTHLP PDRLVLDLDP GEGAGLPECA 150
EVARLARAIL QGMGLEPLPV TSGSKGIHLY AALSAGSSPE GAKPSSAEQI 200
TDVAHELARY LEAEHPDLVV SDMKKSLRGG KVLVDWSQNN GAKTTIAPYS 250
LRGRTRPTVA APRTWAELDD PDLRQLSYEE VLDRVARDGD LLAGLTAGHL 300
SQLEPTPAHL ARFERLATYN AKRDPARTPE PFDTAPPAPV VEPVETTPPV 350
GGVSTGSTTG VGSTIGVGST TGVGAPTFVI QEHHARRLHW DFRLERDGVL 400
VSWALPKGEP TDPGTNHLAV QTEDHPLAYG GFEGTIPNGE YGAGEVTIWD 450
SGTYETEKWR DGKEVIAVLH SERRGTRRLA LIRTGRAEGD NQWLIHRTKA 500
QPAEDVASPA PVVEPVETTT PTRSTAEVAV RLEPMLASAA QPAEVRALEA 550
DGESGSHDWV FEMKWDGYRT LAVVEPGPDG TRAIRLTSRT GQDFTRTYPE 600
LAPLAAQVTG ELPVVLDAEI VALDAAGRPD FRRLQQHAGN VELMVFDVLQ 650
VGDRSLLHTP YDERRTVLAD VLDARRPVHL PAAFDGDLTA ALETSRRLRL 700
EGVMAKRRES TYQPGRRTRQ WLKLKHTAVQ EVVVVGWRPL RAGETDEDPR 750
YAGGLLLAVP ADDGALRYVG RVGTGFSDAE RRDVATRLAA VERKTPPLDG 800
VPRPDAAHTR WVTPRLVGEV EFAEWTGDPT DDPEARLRAA RWRGWRPDKE 850
PADVVVEP 858
Length:858
Mass (Da):93,785
Last modified:January 19, 2010 - v1
Checksum:i21E54D43E8EDAF8D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001821 Genomic DNA. Translation: ACZ31251.1.
RefSeqiWP_012878993.1. NC_013530.1.
YP_003326809.1. NC_013530.1.

Genome annotation databases

EnsemblBacteriaiACZ31251; ACZ31251; Xcel_2233.
GeneIDi8649767.
KEGGixce:Xcel_2233.
PATRICi32553497. VBIXylCel24446_2276.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001821 Genomic DNA. Translation: ACZ31251.1 .
RefSeqi WP_012878993.1. NC_013530.1.
YP_003326809.1. NC_013530.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACZ31251 ; ACZ31251 ; Xcel_2233 .
GeneIDi 8649767.
KEGGi xce:Xcel_2233.
PATRICi 32553497. VBIXylCel24446_2276.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci XCEL446471:GHA2-2274-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07.

Entry informationi

Entry nameiD1BV12_XYLCX
AccessioniPrimary (citable) accession number: D1BV12
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: September 3, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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