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D1BV12

- D1BV12_XYLCX

UniProt

D1BV12 - D1BV12_XYLCX

Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Xcel_2233

Organism
Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (19 Jan 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Enzyme and pathway databases

    BioCyciXCEL446471:GHA2-2274-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, polymerase domain proteinImported
    Gene namesi
    Ordered Locus Names:Xcel_2233Imported
    OrganismiXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)Imported
    Taxonomic identifieri446471 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeXylanimonas
    ProteomesiUP000002255: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D1BV12-1 [UniParc]FASTAAdd to Basket

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    MGAPTTVTVD GHRLQLTNLD KVLYPATGTT KGEVIDYLAR IAPVLLPHAR    50
    RRPATRKRWP DGVEGQVFFQ KNADRSTPSW VRTHRIQHKT SANDYVLVDD 100
    VATLTWLGQT ASLELHVPQW QVGRTGTHLP PDRLVLDLDP GEGAGLPECA 150
    EVARLARAIL QGMGLEPLPV TSGSKGIHLY AALSAGSSPE GAKPSSAEQI 200
    TDVAHELARY LEAEHPDLVV SDMKKSLRGG KVLVDWSQNN GAKTTIAPYS 250
    LRGRTRPTVA APRTWAELDD PDLRQLSYEE VLDRVARDGD LLAGLTAGHL 300
    SQLEPTPAHL ARFERLATYN AKRDPARTPE PFDTAPPAPV VEPVETTPPV 350
    GGVSTGSTTG VGSTIGVGST TGVGAPTFVI QEHHARRLHW DFRLERDGVL 400
    VSWALPKGEP TDPGTNHLAV QTEDHPLAYG GFEGTIPNGE YGAGEVTIWD 450
    SGTYETEKWR DGKEVIAVLH SERRGTRRLA LIRTGRAEGD NQWLIHRTKA 500
    QPAEDVASPA PVVEPVETTT PTRSTAEVAV RLEPMLASAA QPAEVRALEA 550
    DGESGSHDWV FEMKWDGYRT LAVVEPGPDG TRAIRLTSRT GQDFTRTYPE 600
    LAPLAAQVTG ELPVVLDAEI VALDAAGRPD FRRLQQHAGN VELMVFDVLQ 650
    VGDRSLLHTP YDERRTVLAD VLDARRPVHL PAAFDGDLTA ALETSRRLRL 700
    EGVMAKRRES TYQPGRRTRQ WLKLKHTAVQ EVVVVGWRPL RAGETDEDPR 750
    YAGGLLLAVP ADDGALRYVG RVGTGFSDAE RRDVATRLAA VERKTPPLDG 800
    VPRPDAAHTR WVTPRLVGEV EFAEWTGDPT DDPEARLRAA RWRGWRPDKE 850
    PADVVVEP 858
    Length:858
    Mass (Da):93,785
    Last modified:January 19, 2010 - v1
    Checksum:i21E54D43E8EDAF8D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001821 Genomic DNA. Translation: ACZ31251.1.
    RefSeqiWP_012878993.1. NC_013530.1.
    YP_003326809.1. NC_013530.1.

    Genome annotation databases

    EnsemblBacteriaiACZ31251; ACZ31251; Xcel_2233.
    GeneIDi8649767.
    KEGGixce:Xcel_2233.
    PATRICi32553497. VBIXylCel24446_2276.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001821 Genomic DNA. Translation: ACZ31251.1 .
    RefSeqi WP_012878993.1. NC_013530.1.
    YP_003326809.1. NC_013530.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACZ31251 ; ACZ31251 ; Xcel_2233 .
    GeneIDi 8649767.
    KEGGi xce:Xcel_2233.
    PATRICi 32553497. VBIXylCel24446_2276.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci XCEL446471:GHA2-2274-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07Imported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07Imported.

    Entry informationi

    Entry nameiD1BV12_XYLCX
    AccessioniPrimary (citable) accession number: D1BV12
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 19, 2010
    Last sequence update: January 19, 2010
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3