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D1BV12 (D1BV12_XYLCX) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA polymerase LigD, polymerase domain protein EMBL ACZ31251.1
Gene names
Ordered Locus Names:Xcel_2233
OrganismXylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) [Complete proteome] [HAMAP]
Taxonomic identifier446471 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Promicromonosporaceae › Xylanimonas ›

Protein attributes

Sequence length858 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D1BV12 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 21E54D43E8EDAF8D

FASTA85893,785
        10         20         30         40         50         60 
MGAPTTVTVD GHRLQLTNLD KVLYPATGTT KGEVIDYLAR IAPVLLPHAR RRPATRKRWP 

        70         80         90        100        110        120 
DGVEGQVFFQ KNADRSTPSW VRTHRIQHKT SANDYVLVDD VATLTWLGQT ASLELHVPQW 

       130        140        150        160        170        180 
QVGRTGTHLP PDRLVLDLDP GEGAGLPECA EVARLARAIL QGMGLEPLPV TSGSKGIHLY 

       190        200        210        220        230        240 
AALSAGSSPE GAKPSSAEQI TDVAHELARY LEAEHPDLVV SDMKKSLRGG KVLVDWSQNN 

       250        260        270        280        290        300 
GAKTTIAPYS LRGRTRPTVA APRTWAELDD PDLRQLSYEE VLDRVARDGD LLAGLTAGHL 

       310        320        330        340        350        360 
SQLEPTPAHL ARFERLATYN AKRDPARTPE PFDTAPPAPV VEPVETTPPV GGVSTGSTTG 

       370        380        390        400        410        420 
VGSTIGVGST TGVGAPTFVI QEHHARRLHW DFRLERDGVL VSWALPKGEP TDPGTNHLAV 

       430        440        450        460        470        480 
QTEDHPLAYG GFEGTIPNGE YGAGEVTIWD SGTYETEKWR DGKEVIAVLH SERRGTRRLA 

       490        500        510        520        530        540 
LIRTGRAEGD NQWLIHRTKA QPAEDVASPA PVVEPVETTT PTRSTAEVAV RLEPMLASAA 

       550        560        570        580        590        600 
QPAEVRALEA DGESGSHDWV FEMKWDGYRT LAVVEPGPDG TRAIRLTSRT GQDFTRTYPE 

       610        620        630        640        650        660 
LAPLAAQVTG ELPVVLDAEI VALDAAGRPD FRRLQQHAGN VELMVFDVLQ VGDRSLLHTP 

       670        680        690        700        710        720 
YDERRTVLAD VLDARRPVHL PAAFDGDLTA ALETSRRLRL EGVMAKRRES TYQPGRRTRQ 

       730        740        750        760        770        780 
WLKLKHTAVQ EVVVVGWRPL RAGETDEDPR YAGGLLLAVP ADDGALRYVG RVGTGFSDAE 

       790        800        810        820        830        840 
RRDVATRLAA VERKTPPLDG VPRPDAAHTR WVTPRLVGEV EFAEWTGDPT DDPEARLRAA 

       850 
RWRGWRPDKE PADVVVEP

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001821 Genomic DNA. Translation: ACZ31251.1.
RefSeqYP_003326809.1. NC_013530.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACZ31251; ACZ31251; Xcel_2233.
GeneID8649767.
KEGGxce:Xcel_2233.
PATRIC32553497. VBIXylCel24446_2276.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMASGSKGIH.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD1BV12_XYLCX
AccessionPrimary (citable) accession number: D1BV12
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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