D1BUF6 (D1BUF6_XYLCX) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Beta-galactosidase PIRNR PIRNR001084
Short name=Beta-gal PIRNR PIRNR001084
EC=3.2.1.23 PIRNR PIRNR001084

Gene names

Ordered Locus Names:

Xcel_2151

Organism

Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) [Complete proteome] [HAMAP]

Taxonomic identifier

446471 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Promicromonosporaceae › Xylanimonas › Xylanimonas cellulosilytica

Protein attributes

Sequence length	685 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084
Sequence similarities	Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Ontologies

Keywords
Molecular function	Glycosidase PIRNR PIRNR001084 EMBL ACZ31169.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	galactose metabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	beta-galactosidase complex Inferred from electronic annotation. Source: InterPro
Molecular_function	beta-galactosidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	162	1	Proton donor By similarity PIRSR PIRSR001084-1
	Active site	318	1	Nucleophile By similarity PIRSR PIRSR001084-1
	Binding site	123	1	Substrate By similarity PIRSR PIRSR001084-2
	Binding site	161	1	Substrate By similarity PIRSR PIRSR001084-2
	Binding site	326	1	Substrate By similarity PIRSR PIRSR001084-2

Sequences

	Sequence		Length	Mass (Da)
	D1BUF6 [UniParc]. Last modified January 19, 2010. Version 1. Checksum: B7BC9742D0BEE111	FASTA	685	74,530
	10 20 30 40 50 60 MNTPFSPGPD YTGWLPGLDA ICYGGDYNPE QWPEEVWEQD VALMKEAGVN LVSIGIFSWA 70 80 90 100 110 120 LLEPRDGEFD FAWLDRLIEL LHSHGIRVDL GTPTASPPAW FFRQYPESRV VTKNGTVLGF 130 140 150 160 170 180 GSRGMAAPSS SDYRRHAVRI ATQLAERYGT HPALALWHVH NEYGAPVGED FSAHAQRAWR 190 200 210 220 230 240 TWLRDRYVTL DALNAAWGTR FWGQVYGDWQ EVGVPAATPS IANPAQRLDF ARFTDAMLRE 250 260 270 280 290 300 CFVAERDAIR AHSTVPITTN FMAVACPATD LFAWGREVDI VSNDHYLWAA DPRNYVTLAL 310 320 330 340 350 360 AADLTRSVAG GKPWMLLEHS TSGVNWQPRN VAKRAGEEQR NAFSHLGRGA DAIMFFQWRA 370 380 390 400 410 420 SRSGAEKFHS AMIPHAGTNS RIWREVVSLG SVLGQLGELR GSRTQADVAI LWDQESLWAQ 430 440 450 460 470 480 GLEWRPSEDL QAGERIQTFY DRLWRDGVTV DLAHPSSDLS AYRLVVAPAS YLLTQASAAN 490 500 510 520 530 540 LTRYVEGGGT LLVSCFSGVV DEFDRVHEGG FMAPLRDALG VQVEELLPLR EGESLSVVGL 550 560 570 580 590 600 SPSSDDEAAG AVTGTVWAEA LMLGGAEVVG TYASGPAAGD AAITRHTHGA GTGWYLSTVL 610 620 630 640 650 660 DADALAPLMQ RVYADAGVVP SDLPEDVEVL HRVGEGTEWT VAINHTDADA AVPVGTGAMD 670 680 ALSGAAVDGA VKVPAGEVRV LRRAR

References

[1]

"The complete chromosome of Xylanimonas cellulosilytica DSM 15894." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Foster B., Clum A., Brettin T., Detter J.C., Han C. , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Gehrich-Schroeter G., Schneider S., Pukall S.R., Klenk H.P., Eisen J.A. Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 15894 / CECT 5975 / LMG 20990 / XIL07.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001821 Genomic DNA. Translation: ACZ31169.1.
RefSeq	YP_003326727.1. NC_013530.1.
3D structure databases
ProteinModelPortal	D1BUF6.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACZ31169; ACZ31169; Xcel_2151.
GeneID	8649685.
KEGG	xce:Xcel_2151.
PATRIC	32553329. VBIXylCel24446_2192.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000117811.
KO	K12308.
OMA	HNEYGAP.
Family and domain databases
Gene3D	3.20.20.80. 1 hit.
InterPro	IPR013739. Beta_galactosidase_C. IPR013738. Beta_galactosidase_Trimer. IPR003476. Glyco_hydro_42. IPR013529. Glyco_hydro_42_N. IPR013781. Glyco_hydro_catalytic_dom. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Pfam	PF02449. Glyco_hydro_42. 1 hit. PF08533. Glyco_hydro_42C. 1 hit. PF08532. Glyco_hydro_42M. 1 hit. [Graphical view]
PIRSF	PIRSF001084. B-galactosidase. 1 hit.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D1BUF6_XYLCX

Accession

Primary (citable) accession number: D1BUF6

Entry history

Integrated into UniProtKB/TrEMBL:	January 19, 2010
Last sequence update:	January 19, 2010
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)