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D1BR21 (D1BR21_VEIPT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Tryptophan--tRNA ligase HAMAP-Rule MF_00140
EC=6.1.1.2 HAMAP-Rule MF_00140
Alternative name(s):
Tryptophanyl-tRNA synthetase HAMAP-Rule MF_00140
Gene names
Name:trpS HAMAP-Rule MF_00140
Ordered Locus Names:Vpar_0300
OrganismVeillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) (Veillonella alcalescens) [Complete proteome] [HAMAP]
Taxonomic identifier479436 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Negativicutes › Selenomonadales › Veillonellaceae › Veillonella ›

Protein attributes

Sequence length328 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophyl-tRNA(Trp). SAAS SAAS024109 HAMAP-Rule MF_00140

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00140

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00140.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. RuleBase RU003489 HAMAP-Rule MF_00140

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif10 – 189"HIGH" region By similarity HAMAP-Rule MF_00140
Motif193 – 1975"KMSKS" region By similarity HAMAP-Rule MF_00140

Sites

Binding site1961ATP By similarity HAMAP-Rule MF_00140

Sequences

Sequence LengthMass (Da)Tools
D1BR21 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 9E62CFECDED1FF53

FASTA32836,771
        10         20         30         40         50         60 
MAVIFSGIQP SGELTLGNYL GALRNFLDYQ DTDECYYCIV NQHAITVPQD PKELFQNTRN 

        70         80         90        100        110        120 
LAALYLAVGL NPKKVTLFVQ SEVPEHVKLG WVMQSISYVG ELERMTQYKD KSQKQGDSIP 

       130        140        150        160        170        180 
TALLTYPPLM AADILLYGTN YVPVGEDQKQ HLELTRNLAE RFNRRFGETF VVPDIKVGEG 

       190        200        210        220        230        240 
GARVMSLQEP TKKMSKSDDN QNATIRLLDA PDLIVKKLKR AQTDSDNAVR YDKENKPGIS 

       250        260        270        280        290        300 
NLMGIYRAIT KDSYEAIEEM YAGKGYGVFK SDIADLLVAT LEPIQQRYNE LITSPELDVI 

       310        320 
LDEGAAKAHA KASAMYRKVE QAMGLCRK

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001820 Genomic DNA. Translation: ACZ23984.1.
RefSeqYP_003311264.1. NC_013520.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACZ23984; ACZ23984; Vpar_0300.
GeneID8635744.
KEGGvpr:Vpar_0300.
PATRIC32529882. VBIVeiPar80537_0292.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000059940.
KOK01867.

Family and domain databases

Gene3D3.40.50.620. 1 hit.
HAMAPMF_00140_B. Trp_tRNA_synth_B.
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR002305. aa-tRNA-synth_Ic.
IPR014729. Rossmann-like_a/b/a_fold.
IPR002306. Trp-tRNA-ligase.
IPR024109. Trp-tRNA-ligase_bac-type.
[Graphical view]
PANTHERPTHR10055. PTHR10055. 1 hit.
PfamPF00579. tRNA-synt_1b. 1 hit.
[Graphical view]
PRINTSPR01039. TRNASYNTHTRP.
TIGRFAMsTIGR00233. trpS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD1BR21_VEIPT
AccessionPrimary (citable) accession number: D1BR21
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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