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D1BQI7

- D1BQI7_VEIPT

UniProt

D1BQI7 - D1BQI7_VEIPT

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Protein
Submitted name: NAD-dependent epimerase/dehydratase
Gene
Vpar_0111
Organism
Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) (Veillonella alcalescens)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei35 – 351NADPImported
Binding sitei40 – 401NADPImported
Binding sitei55 – 551Chloride 3; via amide nitrogen
Binding sitei58 – 581NADPImported
Binding sitei80 – 801NADPImported
Binding sitei84 – 841NADPImported
Binding sitei128 – 1281NADPImported
Binding sitei154 – 1541NADP; via amide nitrogenImported
Binding sitei179 – 1791NADPImported

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi12 – 143NADPImported

GO - Molecular functioni

  1. nucleotide binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

NADPImported, Nucleotide-bindingImported

Enzyme and pathway databases

BioCyciVPAR479436:GHOS-114-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
NAD-dependent epimerase/dehydrataseImported
Gene namesi
Ordered Locus Names:Vpar_0111Imported
OrganismiVeillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) (Veillonella alcalescens)Imported
Taxonomic identifieri479436 [NCBI]
Taxonomic lineageiBacteriaFirmicutesNegativicutesSelenomonadalesVeillonellaceaeVeillonella
ProteomesiUP000007968: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3R6DX-ray1.25A2-218[»]
4HNGX-ray1.50A1-218[»]
4HNHX-ray1.58A/B1-218[»]
4IPTX-ray1.55A1-218[»]
ProteinModelPortaliD1BQI7.

Miscellaneous databases

EvolutionaryTraceiD1BQI7.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000262431.
OMAiGHFTTAN.
OrthoDBiEOG6R5C9T.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1BQI7-1 [UniParc]FASTAAdd to Basket

« Hide

MYKYITILGA AGQIAQKLTA TLLTYTDMHI TLYGRQLKTR IPPEIIDHER    50
VTVIEGSFQN PGKLEQAVTN AEVVFVGAME SGSDMASIVK ALSRKNIRRV 100
IGVSMAGLSG EFPVALEKWT FDNLPISYVQ GERQARNVLR ESNLNYTILR 150
LTWLYNDPEK TDYELIPEGA QFNDAQVSRE AVVKAIFDIL HAADETPFHR 200
TSIGVGEPGT HYDKPSFH 218
Length:218
Mass (Da):24,384
Last modified:January 19, 2010 - v1
Checksum:i28C9D22E9D952388
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001820 Genomic DNA. Translation: ACZ23800.1.
RefSeqiYP_003311080.1. NC_013520.1.

Genome annotation databases

EnsemblBacteriaiACZ23800; ACZ23800; Vpar_0111.
GeneIDi8635554.
KEGGivpr:Vpar_0111.
PATRICi32529510. VBIVeiPar80537_0107.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001820 Genomic DNA. Translation: ACZ23800.1 .
RefSeqi YP_003311080.1. NC_013520.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3R6D X-ray 1.25 A 2-218 [» ]
4HNG X-ray 1.50 A 1-218 [» ]
4HNH X-ray 1.58 A/B 1-218 [» ]
4IPT X-ray 1.55 A 1-218 [» ]
ProteinModelPortali D1BQI7.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACZ23800 ; ACZ23800 ; Vpar_0111 .
GeneIDi 8635554.
KEGGi vpr:Vpar_0111.
PATRICi 32529510. VBIVeiPar80537_0107.

Phylogenomic databases

HOGENOMi HOG000262431.
OMAi GHFTTAN.
OrthoDBi EOG6R5C9T.

Enzyme and pathway databases

BioCyci VPAR479436:GHOS-114-MONOMER.

Miscellaneous databases

EvolutionaryTracei D1BQI7.

Family and domain databases

Gene3Di 3.40.50.720. 1 hit.
InterProi IPR016040. NAD(P)-bd_dom.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 10790 / DSM 2008 / JCM 12972 / Te3.
  2. "Crystal structure of NAD-dependent epimerase/dehydratase from Veillonella parvula DSM 2008 with Cz-methylated lysine."
    Chang C., Hatzos-Skintges C., Clancy S., Joachimiak A.
    Submitted (MAR-2011) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.25 ANGSTROMS) OF 2-218.
  3. "The crystal structure of a short-chain dehydrogenases/reductase (wide type) from Veillonella parvula DSM 2008 in complex with NADP."
    Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
    Submitted (OCT-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.58 ANGSTROMS) IN COMPLEX WITH NADP.
  4. "The crystal structure of a short-chain dehydrogenases/reductase (wide type) from Veillonella parvula DSM 2008."
    Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
    Submitted (OCT-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS).
  5. "The crystal structure of a short-chain dehydrogenases/reductase (ethylated) from Veillonella parvula DSM 2008."
    Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
    Submitted (JAN-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS).

Entry informationi

Entry nameiD1BQI7_VEIPT
AccessioniPrimary (citable) accession number: D1BQI7
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: September 3, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome

External Data

Dasty 3

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