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D1BQI7 (D1BQI7_VEIPT) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
NAD-dependent epimerase/dehydratase EMBL ACZ23800.1
Gene names
Ordered Locus Names:Vpar_0111 EMBL ACZ23800.1
OrganismVeillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) (Veillonella alcalescens) [Complete proteome] [HAMAP] EMBL ACZ23800.1
Taxonomic identifier479436 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Negativicutes › Selenomonadales › Veillonellaceae › Veillonella ›

Protein attributes

Sequence length218 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 3R6D PDB 3R14 PDB 4HNG PDB 4HNH PDB 4IPT
Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Amino acid modifications

Modified residue31N6-methyllysine PDB 3R6D
Modified residue171N6-methyllysine PDB 3R6D
Modified residue631N6-methyllysine PDB 3R6D
Modified residue951N6-methyllysine PDB 3R6D
Modified residue1601N6-methyllysine PDB 3R6D
Modified residue2141N6-methyllysine PDB 3R6D

Sequences

Sequence LengthMass (Da)Tools
D1BQI7 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 28C9D22E9D952388

FASTA21824,384
        10         20         30         40         50         60 
MYKYITILGA AGQIAQKLTA TLLTYTDMHI TLYGRQLKTR IPPEIIDHER VTVIEGSFQN 

        70         80         90        100        110        120 
PGKLEQAVTN AEVVFVGAME SGSDMASIVK ALSRKNIRRV IGVSMAGLSG EFPVALEKWT 

       130        140        150        160        170        180 
FDNLPISYVQ GERQARNVLR ESNLNYTILR LTWLYNDPEK TDYELIPEGA QFNDAQVSRE 

       190        200        210 
AVVKAIFDIL HAADETPFHR TSIGVGEPGT HYDKPSFH

« Hide

References

« Hide 'large scale' references
[1]"The complete genome of Veillonella parvula DSM 2008."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Saunders E., Brettin T., Detter J.C., Han C., Larimer F. expand/collapse author list , Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Wellnitz S., Schneider S., Gronow S., Klenk H.P., Eisen J.A.
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 10790 / DSM 2008 / JCM 12972 / Te3.
[2]"Crystal structure of NAD-dependent epimerase/dehydratase from Veillonella parvula DSM 2008 with Cz-methylated lysine."
Chang C., Hatzos-Skintges C., Clancy S., Joachimiak A.
Submitted (MAR-2011) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.25 ANGSTROMS), METHYLATION AT LYS-3; LYS-17; LYS-63; LYS-95; LYS-160 AND LYS-214.
[3]"The crystal structure of a short-chain dehydrogenases/reductase (wide type) from Veillonella parvula DSM 2008 in complex with NADP."
Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
Submitted (OCT-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.58 ANGSTROMS).
[4]"The crystal structure of a short-chain dehydrogenases/reductase (wide type) from Veillonella parvula DSM 2008."
Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
Submitted (OCT-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS).
[5]"The crystal structure of a short-chain dehydrogenases/reductase (ethylated) from Veillonella parvula DSM 2008."
Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
Submitted (JAN-2013) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001820 Genomic DNA. Translation: ACZ23800.1.
RefSeqYP_003311080.1. NC_013520.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3R6DX-ray1.25A1-218[»]
4HNGX-ray1.50A1-218[»]
4HNHX-ray1.58A/B1-218[»]
4IPTX-ray1.55A1-218[»]
ProteinModelPortalD1BQI7.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACZ23800; ACZ23800; Vpar_0111.
GeneID8635554.
KEGGvpr:Vpar_0111.
PATRIC32529510. VBIVeiPar80537_0107.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000262431.

Enzyme and pathway databases

BioCycVPAR479436:GHOS-114-MONOMER.

Family and domain databases

Gene3D3.40.50.720. 1 hit.
InterProIPR016040. NAD(P)-bd_dom.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceD1BQI7.

Entry information

Entry nameD1BQI7_VEIPT
AccessionPrimary (citable) accession number: D1BQI7
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: May 29, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info