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D1BQI7 (D1BQI7_VEIPT) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Vpar_0111 EMBL ACZ23800.1
OrganismVeillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) (Veillonella alcalescens) [Complete proteome] [HAMAP] EMBL ACZ23800.1
Taxonomic identifier479436 [NCBI]
Taxonomic lineageBacteriaFirmicutesNegativicutesSelenomonadalesVeillonellaceaeVeillonella

Protein attributes

Sequence length218 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding12 – 143NADP

Sites

Binding site111Chloride 1; via amide nitrogen PDB 4HNG PDB 4IPT
Binding site141Chloride 2; via amide nitrogen PDB 4HNG PDB 4IPT
Binding site351NADP
Binding site401NADP
Binding site551Chloride 3; via amide nitrogen
Binding site581NADP
Binding site801NADP
Binding site841NADP
Binding site1281NADP
Binding site1541NADP; via amide nitrogen
Binding site1791Chloride 2 PDB 4HNG PDB 4IPT
Binding site1791NADP

Sequences

Sequence LengthMass (Da)Tools
D1BQI7 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 28C9D22E9D952388

FASTA21824,384
        10         20         30         40         50         60 
MYKYITILGA AGQIAQKLTA TLLTYTDMHI TLYGRQLKTR IPPEIIDHER VTVIEGSFQN 

        70         80         90        100        110        120 
PGKLEQAVTN AEVVFVGAME SGSDMASIVK ALSRKNIRRV IGVSMAGLSG EFPVALEKWT 

       130        140        150        160        170        180 
FDNLPISYVQ GERQARNVLR ESNLNYTILR LTWLYNDPEK TDYELIPEGA QFNDAQVSRE 

       190        200        210 
AVVKAIFDIL HAADETPFHR TSIGVGEPGT HYDKPSFH 

« Hide

References

« Hide 'large scale' references
[1]"The complete genome of Veillonella parvula DSM 2008."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Saunders E., Brettin T., Detter J.C., Han C., Larimer F. expand/collapse author list , Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Wellnitz S., Schneider S., Gronow S., Klenk H.P., Eisen J.A.
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 10790 / DSM 2008 / JCM 12972 / Te3.
[2]"Crystal structure of NAD-dependent epimerase/dehydratase from Veillonella parvula DSM 2008 with Cz-methylated lysine."
Chang C., Hatzos-Skintges C., Clancy S., Joachimiak A.
Submitted (MAR-2011) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.25 ANGSTROMS) OF 2-218.
[3]"The crystal structure of a short-chain dehydrogenases/reductase (wide type) from Veillonella parvula DSM 2008 in complex with NADP."
Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
Submitted (OCT-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.58 ANGSTROMS) IN COMPLEX WITH CHLORIDE AND NADP.
[4]"The crystal structure of a short-chain dehydrogenases/reductase (wide type) from Veillonella parvula DSM 2008."
Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
Submitted (OCT-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) IN COMPLEX WITH CHLORIDE.
[5]"The crystal structure of a short-chain dehydrogenases/reductase (ethylated) from Veillonella parvula DSM 2008."
Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
Submitted (JAN-2013) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS) IN COMPLEX WITH CHLORIDE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001820 Genomic DNA. Translation: ACZ23800.1.
RefSeqYP_003311080.1. NC_013520.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3R6DX-ray1.25A2-218[»]
4HNGX-ray1.50A1-218[»]
4HNHX-ray1.58A/B1-218[»]
4IPTX-ray1.55A1-218[»]
ProteinModelPortalD1BQI7.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACZ23800; ACZ23800; Vpar_0111.
GeneID8635554.
KEGGvpr:Vpar_0111.
PATRIC32529510. VBIVeiPar80537_0107.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000262431.
OMAGHFTTAN.
OrthoDBEOG6R5C9T.

Enzyme and pathway databases

BioCycVPAR479436:GHOS-114-MONOMER.

Family and domain databases

Gene3D3.40.50.720. 1 hit.
InterProIPR016040. NAD(P)-bd_dom.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceD1BQI7.

Entry information

Entry nameD1BQI7_VEIPT
AccessionPrimary (citable) accession number: D1BQI7
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: June 11, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)