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D1BQI7

- D1BQI7_VEIPT

UniProt

D1BQI7 - D1BQI7_VEIPT

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Protein
Submitted name:

NAD-dependent epimerase/dehydratase

Gene

Vpar_0111

Organism
Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) (Veillonella alcalescens)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei35 – 351NADPImported
Binding sitei40 – 401NADPImported
Binding sitei58 – 581NADPImported
Binding sitei80 – 801NADPImported
Binding sitei84 – 841NADPImported
Binding sitei128 – 1281NADPImported
Binding sitei154 – 1541NADP; via amide nitrogenImported
Binding sitei179 – 1791NADPImported

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi12 – 143NADPImported

GO - Molecular functioni

  1. nucleotide binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

NADPImported, Nucleotide-bindingImported

Enzyme and pathway databases

BioCyciVPAR479436:GHOS-114-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
NAD-dependent epimerase/dehydrataseImported
Gene namesi
Ordered Locus Names:Vpar_0111Imported
OrganismiVeillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) (Veillonella alcalescens)Imported
Taxonomic identifieri479436 [NCBI]
Taxonomic lineageiBacteriaFirmicutesNegativicutesSelenomonadalesVeillonellaceaeVeillonella
ProteomesiUP000007968: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3R6DX-ray1.25A2-218[»]
4HNGX-ray1.50A1-218[»]
4HNHX-ray1.58A/B1-218[»]
4IPTX-ray1.55A1-218[»]
ProteinModelPortaliD1BQI7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiD1BQI7.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000262431.
OMAiGHFTTAN.
OrthoDBiEOG6R5C9T.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1BQI7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYKYITILGA AGQIAQKLTA TLLTYTDMHI TLYGRQLKTR IPPEIIDHER
60 70 80 90 100
VTVIEGSFQN PGKLEQAVTN AEVVFVGAME SGSDMASIVK ALSRKNIRRV
110 120 130 140 150
IGVSMAGLSG EFPVALEKWT FDNLPISYVQ GERQARNVLR ESNLNYTILR
160 170 180 190 200
LTWLYNDPEK TDYELIPEGA QFNDAQVSRE AVVKAIFDIL HAADETPFHR
210
TSIGVGEPGT HYDKPSFH
Length:218
Mass (Da):24,384
Last modified:January 19, 2010 - v1
Checksum:i28C9D22E9D952388
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001820 Genomic DNA. Translation: ACZ23800.1.
RefSeqiYP_003311080.1. NC_013520.1.

Genome annotation databases

EnsemblBacteriaiACZ23800; ACZ23800; Vpar_0111.
GeneIDi8635554.
KEGGivpr:Vpar_0111.
PATRICi32529510. VBIVeiPar80537_0107.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001820 Genomic DNA. Translation: ACZ23800.1 .
RefSeqi YP_003311080.1. NC_013520.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3R6D X-ray 1.25 A 2-218 [» ]
4HNG X-ray 1.50 A 1-218 [» ]
4HNH X-ray 1.58 A/B 1-218 [» ]
4IPT X-ray 1.55 A 1-218 [» ]
ProteinModelPortali D1BQI7.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACZ23800 ; ACZ23800 ; Vpar_0111 .
GeneIDi 8635554.
KEGGi vpr:Vpar_0111.
PATRICi 32529510. VBIVeiPar80537_0107.

Phylogenomic databases

HOGENOMi HOG000262431.
OMAi GHFTTAN.
OrthoDBi EOG6R5C9T.

Enzyme and pathway databases

BioCyci VPAR479436:GHOS-114-MONOMER.

Miscellaneous databases

EvolutionaryTracei D1BQI7.

Family and domain databases

Gene3Di 3.40.50.720. 1 hit.
InterProi IPR016040. NAD(P)-bd_dom.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 10790 / DSM 2008 / JCM 12972 / Te3Imported.
  2. "Crystal structure of NAD-dependent epimerase/dehydratase from Veillonella parvula DSM 2008 with Cz-methylated lysine."
    Chang C., Hatzos-Skintges C., Clancy S., Joachimiak A.
    Submitted (MAR-2011) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.25 ANGSTROMS) OF 2-218.
  3. "The crystal structure of a short-chain dehydrogenases/reductase (wide type) from Veillonella parvula DSM 2008 in complex with NADP."
    Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
    Submitted (OCT-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.58 ANGSTROMS) IN COMPLEX WITH NADP.
  4. "The crystal structure of a short-chain dehydrogenases/reductase (wide type) from Veillonella parvula DSM 2008."
    Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
    Submitted (OCT-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS).
  5. "The crystal structure of a short-chain dehydrogenases/reductase (ethylated) from Veillonella parvula DSM 2008."
    Tan K., Hatzos-Skintges C., Clancy S., Joachimiak A.
    Submitted (JAN-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS).

Entry informationi

Entry nameiD1BQI7_VEIPT
AccessioniPrimary (citable) accession number: D1BQI7
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: November 26, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3