D1BEG9 (D1BEG9_SANKS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D/DNA polymerase LigD EMBL ACZ21247.1

Gene names

Ordered Locus Names:

Sked_13060 EMBL ACZ21247.1

Organism

Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) [Complete proteome] [HAMAP] EMBL ACZ21247.1

Taxonomic identifier

446469 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Sanguibacteraceae › Sanguibacter › Sanguibacter keddieii

Protein attributes

Sequence length	852 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACZ21247.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D1BEG9 [UniParc]. Last modified January 19, 2010. Version 1. Checksum: C691A67CA2ED5363	FASTA	852	91,671
	10 20 30 40 50 60 MPDDDTGAPS RAAQRETVTV DGHRVTLTNL SKVIYPETGT TKADVLAYLA AVAQPFVAHV 70 80 90 100 110 120 TGRPATRKRW VHGTGGPVFF QKNLEDSAPT WVHRRDIQHS DHVNTYPLVD DLATLTWLGQ 130 140 150 160 170 180 VAALEIHVPQ WRFGRTGVEH RPDRLVLDLD PGPGTGLDEC VQVALWAREI LTGMDLEPFP 190 200 210 220 230 240 VTSGSKGIHL YAALDGAHDS DAVSAVAHEL ARALQADHPD LVVSDMKKSL REGKVLVDWS 250 260 270 280 290 300 QNNRNKTTIS PYSLRGRDRP YVAAPRSWAE LEAGGLTHLE ADEVVARLER DGDLLAPLLT 310 320 330 340 350 360 GGHAALEPTT ARMAGFERTD RLEVYRSKRD ASKTPEPVPE ASPTEASPGD GPAGSADPAA 370 380 390 400 410 420 PTFVIQEHHA RALHYDFRLE HDGVLVSWAL PKGEPVDTTH NRLGVQTEDH PLEYGSFEGT 430 440 450 460 470 480 IPRGEYGAGT VSIWDRGTYD LHKWREGEEV IVTLHSDGSG GTDRGSRRIA LIHTAHTGGG 490 500 510 520 530 540 TSWLVHRMKD DGHSGGGAAG ASGEEDDKAE VAGSAPGEGS ASSSGSRDRP LTPMLATPGT 550 560 570 580 590 600 VDDLDEDDWA FEMKWDGIRA VATVVADRDG SPGSVRLTSR NGNDLTASYP ELAALSGCVA 610 620 630 640 650 660 EDVVLDGEIV ALDQGGRPSF GRLQSRMNLT ARRDVAAAQK AQGVVYMAFD LVERSGRRTT 670 680 690 700 710 720 RVGYDGRRAA LEELVTESGP VHVPPAFTSD AASALAASKE LGLEGIVAKR RSSTYRPGRP 730 740 750 760 770 780 AHTWVKVKHV QTQEVVVVGW RTGNGARAQT LGSLLVAVPD ATGTLRYAGR VGTGFTDATL 790 800 810 820 830 840 ERLATELARN PRQTPPVDDV PAADAGDAHW VRADRVGEVA HAGWTDQGRL RHPVWRGWRS 850 DKAPGDVVRE DA

References

[1]

"Complete genome sequence of Sanguibacter keddieii type strain (ST-74)." Ivanova N., Sikorski J., Sims D., Brettin T., Detter J.C., Han C., Lapidus A., Copeland A., Glavina Del Rio T., Nolan M., Chen F., Lucas S., Tice H., Cheng J.F., Bruce D., Goodwin L., Pitluck S., Pati A. , Mavrommatis K., Chen A., Palaniappan K., D'haeseleer P., Chain P., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Goker M., Pukall R., Klenk H.P., Kyrpides N.C. Stand. Genomic Sci. 1:110-118(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001819 Genomic DNA. Translation: ACZ21247.1.
RefSeq	YP_003314081.1. NC_013521.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACZ21247; ACZ21247; Sked_13060.
GeneID	8632942.
KEGG	ske:Sked_13060.
PATRIC	32391048. VBISanKed123513_1284.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222509.
KO	K01971.
OMA	SGSKGIH.
Enzyme and pathway databases
BioCyc	SKED446469:GHD3-1303-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D1BEG9_SANKS

Accession

Primary (citable) accession number: D1BEG9

Entry history

Integrated into UniProtKB/TrEMBL:	January 19, 2010
Last sequence update:	January 19, 2010
Last modified:	May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)