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D1BEG9

- D1BEG9_SANKS

UniProt

D1BEG9 - D1BEG9_SANKS

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Protein
Submitted name:

DNA ligase D/DNA polymerase LigD

Gene
Sked_13060
Organism
Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSKED446469:GHD3-1303-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D/DNA polymerase LigDImported
Gene namesi
Ordered Locus Names:Sked_13060Imported
OrganismiSanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74)Imported
Taxonomic identifieri446469 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeSanguibacteraceaeSanguibacter
ProteomesiUP000000322: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1BEG9-1 [UniParc]FASTAAdd to Basket

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MPDDDTGAPS RAAQRETVTV DGHRVTLTNL SKVIYPETGT TKADVLAYLA    50
AVAQPFVAHV TGRPATRKRW VHGTGGPVFF QKNLEDSAPT WVHRRDIQHS 100
DHVNTYPLVD DLATLTWLGQ VAALEIHVPQ WRFGRTGVEH RPDRLVLDLD 150
PGPGTGLDEC VQVALWAREI LTGMDLEPFP VTSGSKGIHL YAALDGAHDS 200
DAVSAVAHEL ARALQADHPD LVVSDMKKSL REGKVLVDWS QNNRNKTTIS 250
PYSLRGRDRP YVAAPRSWAE LEAGGLTHLE ADEVVARLER DGDLLAPLLT 300
GGHAALEPTT ARMAGFERTD RLEVYRSKRD ASKTPEPVPE ASPTEASPGD 350
GPAGSADPAA PTFVIQEHHA RALHYDFRLE HDGVLVSWAL PKGEPVDTTH 400
NRLGVQTEDH PLEYGSFEGT IPRGEYGAGT VSIWDRGTYD LHKWREGEEV 450
IVTLHSDGSG GTDRGSRRIA LIHTAHTGGG TSWLVHRMKD DGHSGGGAAG 500
ASGEEDDKAE VAGSAPGEGS ASSSGSRDRP LTPMLATPGT VDDLDEDDWA 550
FEMKWDGIRA VATVVADRDG SPGSVRLTSR NGNDLTASYP ELAALSGCVA 600
EDVVLDGEIV ALDQGGRPSF GRLQSRMNLT ARRDVAAAQK AQGVVYMAFD 650
LVERSGRRTT RVGYDGRRAA LEELVTESGP VHVPPAFTSD AASALAASKE 700
LGLEGIVAKR RSSTYRPGRP AHTWVKVKHV QTQEVVVVGW RTGNGARAQT 750
LGSLLVAVPD ATGTLRYAGR VGTGFTDATL ERLATELARN PRQTPPVDDV 800
PAADAGDAHW VRADRVGEVA HAGWTDQGRL RHPVWRGWRS DKAPGDVVRE 850
DA 852
Length:852
Mass (Da):91,671
Last modified:January 19, 2010 - v1
Checksum:iC691A67CA2ED5363
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001819 Genomic DNA. Translation: ACZ21247.1.
RefSeqiWP_012866316.1. NC_013521.1.
YP_003314081.1. NC_013521.1.

Genome annotation databases

EnsemblBacteriaiACZ21247; ACZ21247; Sked_13060.
GeneIDi8632942.
KEGGiske:Sked_13060.
PATRICi32391048. VBISanKed123513_1284.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001819 Genomic DNA. Translation: ACZ21247.1 .
RefSeqi WP_012866316.1. NC_013521.1.
YP_003314081.1. NC_013521.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACZ21247 ; ACZ21247 ; Sked_13060 .
GeneIDi 8632942.
KEGGi ske:Sked_13060.
PATRICi 32391048. VBISanKed123513_1284.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.

Enzyme and pathway databases

BioCyci SKED446469:GHD3-1303-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74.

Entry informationi

Entry nameiD1BEG9_SANKS
AccessioniPrimary (citable) accession number: D1BEG9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: September 3, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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