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D1BEG9

- D1BEG9_SANKS

UniProt

D1BEG9 - D1BEG9_SANKS

Protein
Submitted name:

DNA ligase D/DNA polymerase LigD

Gene

Sked_13060

Organism
Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (19 Jan 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSKED446469:GHD3-1303-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase D/DNA polymerase LigDImported
    Gene namesi
    Ordered Locus Names:Sked_13060Imported
    OrganismiSanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74)Imported
    Taxonomic identifieri446469 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeSanguibacteraceaeSanguibacter
    ProteomesiUP000000322: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D1BEG9-1 [UniParc]FASTAAdd to Basket

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    MPDDDTGAPS RAAQRETVTV DGHRVTLTNL SKVIYPETGT TKADVLAYLA    50
    AVAQPFVAHV TGRPATRKRW VHGTGGPVFF QKNLEDSAPT WVHRRDIQHS 100
    DHVNTYPLVD DLATLTWLGQ VAALEIHVPQ WRFGRTGVEH RPDRLVLDLD 150
    PGPGTGLDEC VQVALWAREI LTGMDLEPFP VTSGSKGIHL YAALDGAHDS 200
    DAVSAVAHEL ARALQADHPD LVVSDMKKSL REGKVLVDWS QNNRNKTTIS 250
    PYSLRGRDRP YVAAPRSWAE LEAGGLTHLE ADEVVARLER DGDLLAPLLT 300
    GGHAALEPTT ARMAGFERTD RLEVYRSKRD ASKTPEPVPE ASPTEASPGD 350
    GPAGSADPAA PTFVIQEHHA RALHYDFRLE HDGVLVSWAL PKGEPVDTTH 400
    NRLGVQTEDH PLEYGSFEGT IPRGEYGAGT VSIWDRGTYD LHKWREGEEV 450
    IVTLHSDGSG GTDRGSRRIA LIHTAHTGGG TSWLVHRMKD DGHSGGGAAG 500
    ASGEEDDKAE VAGSAPGEGS ASSSGSRDRP LTPMLATPGT VDDLDEDDWA 550
    FEMKWDGIRA VATVVADRDG SPGSVRLTSR NGNDLTASYP ELAALSGCVA 600
    EDVVLDGEIV ALDQGGRPSF GRLQSRMNLT ARRDVAAAQK AQGVVYMAFD 650
    LVERSGRRTT RVGYDGRRAA LEELVTESGP VHVPPAFTSD AASALAASKE 700
    LGLEGIVAKR RSSTYRPGRP AHTWVKVKHV QTQEVVVVGW RTGNGARAQT 750
    LGSLLVAVPD ATGTLRYAGR VGTGFTDATL ERLATELARN PRQTPPVDDV 800
    PAADAGDAHW VRADRVGEVA HAGWTDQGRL RHPVWRGWRS DKAPGDVVRE 850
    DA 852
    Length:852
    Mass (Da):91,671
    Last modified:January 19, 2010 - v1
    Checksum:iC691A67CA2ED5363
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001819 Genomic DNA. Translation: ACZ21247.1.
    RefSeqiWP_012866316.1. NC_013521.1.
    YP_003314081.1. NC_013521.1.

    Genome annotation databases

    EnsemblBacteriaiACZ21247; ACZ21247; Sked_13060.
    GeneIDi8632942.
    KEGGiske:Sked_13060.
    PATRICi32391048. VBISanKed123513_1284.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001819 Genomic DNA. Translation: ACZ21247.1 .
    RefSeqi WP_012866316.1. NC_013521.1.
    YP_003314081.1. NC_013521.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACZ21247 ; ACZ21247 ; Sked_13060 .
    GeneIDi 8632942.
    KEGGi ske:Sked_13060.
    PATRICi 32391048. VBISanKed123513_1284.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.

    Enzyme and pathway databases

    BioCyci SKED446469:GHD3-1303-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74Imported.

    Entry informationi

    Entry nameiD1BEG9_SANKS
    AccessioniPrimary (citable) accession number: D1BEG9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 19, 2010
    Last sequence update: January 19, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3