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D1BEG9

- D1BEG9_SANKS

UniProt

D1BEG9 - D1BEG9_SANKS

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Protein
Submitted name:

DNA ligase D/DNA polymerase LigD

Gene

Sked_13060

Organism
Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSKED446469:GHD3-1303-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D/DNA polymerase LigDImported
Gene namesi
Ordered Locus Names:Sked_13060Imported
OrganismiSanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74)Imported
Taxonomic identifieri446469 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeSanguibacteraceaeSanguibacter
ProteomesiUP000000322: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D1BEG9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPDDDTGAPS RAAQRETVTV DGHRVTLTNL SKVIYPETGT TKADVLAYLA
60 70 80 90 100
AVAQPFVAHV TGRPATRKRW VHGTGGPVFF QKNLEDSAPT WVHRRDIQHS
110 120 130 140 150
DHVNTYPLVD DLATLTWLGQ VAALEIHVPQ WRFGRTGVEH RPDRLVLDLD
160 170 180 190 200
PGPGTGLDEC VQVALWAREI LTGMDLEPFP VTSGSKGIHL YAALDGAHDS
210 220 230 240 250
DAVSAVAHEL ARALQADHPD LVVSDMKKSL REGKVLVDWS QNNRNKTTIS
260 270 280 290 300
PYSLRGRDRP YVAAPRSWAE LEAGGLTHLE ADEVVARLER DGDLLAPLLT
310 320 330 340 350
GGHAALEPTT ARMAGFERTD RLEVYRSKRD ASKTPEPVPE ASPTEASPGD
360 370 380 390 400
GPAGSADPAA PTFVIQEHHA RALHYDFRLE HDGVLVSWAL PKGEPVDTTH
410 420 430 440 450
NRLGVQTEDH PLEYGSFEGT IPRGEYGAGT VSIWDRGTYD LHKWREGEEV
460 470 480 490 500
IVTLHSDGSG GTDRGSRRIA LIHTAHTGGG TSWLVHRMKD DGHSGGGAAG
510 520 530 540 550
ASGEEDDKAE VAGSAPGEGS ASSSGSRDRP LTPMLATPGT VDDLDEDDWA
560 570 580 590 600
FEMKWDGIRA VATVVADRDG SPGSVRLTSR NGNDLTASYP ELAALSGCVA
610 620 630 640 650
EDVVLDGEIV ALDQGGRPSF GRLQSRMNLT ARRDVAAAQK AQGVVYMAFD
660 670 680 690 700
LVERSGRRTT RVGYDGRRAA LEELVTESGP VHVPPAFTSD AASALAASKE
710 720 730 740 750
LGLEGIVAKR RSSTYRPGRP AHTWVKVKHV QTQEVVVVGW RTGNGARAQT
760 770 780 790 800
LGSLLVAVPD ATGTLRYAGR VGTGFTDATL ERLATELARN PRQTPPVDDV
810 820 830 840 850
PAADAGDAHW VRADRVGEVA HAGWTDQGRL RHPVWRGWRS DKAPGDVVRE

DA
Length:852
Mass (Da):91,671
Last modified:January 19, 2010 - v1
Checksum:iC691A67CA2ED5363
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001819 Genomic DNA. Translation: ACZ21247.1.
RefSeqiYP_003314081.1. NC_013521.1.

Genome annotation databases

EnsemblBacteriaiACZ21247; ACZ21247; Sked_13060.
GeneIDi8632942.
KEGGiske:Sked_13060.
PATRICi32391048. VBISanKed123513_1284.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001819 Genomic DNA. Translation: ACZ21247.1 .
RefSeqi YP_003314081.1. NC_013521.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACZ21247 ; ACZ21247 ; Sked_13060 .
GeneIDi 8632942.
KEGGi ske:Sked_13060.
PATRICi 32391048. VBISanKed123513_1284.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.

Enzyme and pathway databases

BioCyci SKED446469:GHD3-1303-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74Imported.

Entry informationi

Entry nameiD1BEG9_SANKS
AccessioniPrimary (citable) accession number: D1BEG9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: October 29, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3