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D1BCT1 (D1BCT1_SANKS) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase HAMAP MF_00123
EC=6.1.1.19 HAMAP MF_00123
Alternative name(s):
Arginyl-tRNA synthetase HAMAP MF_00123
Gene names
Name:argS HAMAP MF_00123
Ordered Locus Names:Sked_09800
OrganismSanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) [Complete proteome] [HAMAP] EMBL ACZ20929.1
Taxonomic identifier446469 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Sanguibacteraceae › Sanguibacter

Protein attributes

Sequence length559 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP MF_00123

Subunit structure

Monomer By similarity. HAMAP MF_00123

Subcellular location

Cytoplasm By similarity HAMAP MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP MF_00123

Ontologies

Keywords
   Biological processProtein biosynthesis HAMAP MF_00123
   Cellular componentCytoplasm HAMAP MF_00123
   LigandATP-binding HAMAP MF_00123
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase HAMAP MF_00123 EMBL ACZ20929.1
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processarginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionATP binding

Inferred from electronic annotation. Source: HAMAP

arginine-tRNA ligase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif132 – 14211"HIGH" region By similarity HAMAP MF_00123

Sequences

Sequence LengthMass (Da)Tools
D1BCT1 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: DDFD3A783830CAD6

FASTA55960,153
        10         20         30         40         50         60 
MTPNELSEAL RAALAAKIAD GTLALDLDAL PEQILVERPR QREHGDWATN IALQLAKKAG 

        70         80         90        100        110        120 
TQPRALADDL AVRFAETPGV KSVAVAGPGF LNITLDAAAA GELARTVIDQ GAGYGRGVAE 

       130        140        150        160        170        180 
AGKKVNLEFV SANPTGPIHI GGVRWAAVGD SLARVLEAAG AEVTREYYFN DHGAQIDRFS 

       190        200        210        220        230        240 
RSLLARAKGE DAPEDGYGGQ YIQDIADAVL ADVAAAGGPD PLTLPDEEAQ EVFRSIGVDR 

       250        260        270        280        290        300 
MFTEIKAALH GFGVDFDVYF HEDTLHETGA VDRAIARLKD SGHMFEADGA TWLRTTDFGD 

       310        320        330        340        350        360 
DKDRVVIKSD GQAAYIAGDI AYYLDKRERG ADEVIIMLGA DHHGYVGRMM AVCAAFGDQP 

       370        380        390        400        410        420 
GTNLQILIGQ MVNLLKDGEP LRMSKRAGTV VTLEDLVDAV GVDAARYSLV RSSTDSSLDI 

       430        440        450        460        470        480 
DLDLLSKATN ENPVYYVQYA HARTANVARN AADHGVRRED AFDPSLLTAE TESALLGSLT 

       490        500        510        520        530        540 
EFPRVIAQAA ELREPHRVAR YLEALAGAYH KWYADVRVTP VGDEEIGDTH RTRLWLNDAT 

       550 
RQVLANGLAL LGVSAPERM

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001819 Genomic DNA. Translation: ACZ20929.1.
RefSeqYP_003313763.1. NC_013521.1.

3D structure databases

ProteinModelPortalD1BCT1.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8632616.
GenomeReviewsGene locus Sked_09800 in contig CP001819_GR.
KEGGske:Sked_09800.
PATRIC32390390. VBISanKed123513_0961.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAFDVYFHE.

Family and domain databases

HAMAPMF_00123. Arg_tRNA_synth.
[Tree]
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-synth_Ia.
IPR015945. Arg-tRNA-synth_Ia_core.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
Gene3DG3DSA:3.30.1360.70. Arg-tRNA-synth_Ic_N. 1 hit.
G3DSA:3.40.50.620. Rossmann-like_a/b/a_fold. 1 hit.
KOK01887.
PANTHERPTHR11956. Arg_tRNA-synt_1c. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF55190. Arg-tRNA-synth_Ic_N. 1 hit.
SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMsTIGR00456. ArgS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD1BCT1_SANKS
AccessionPrimary (citable) accession number: D1BCT1
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: January 25, 2012
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info