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D1BB87 (D1BB87_SANKS) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase HAMAP MF_00519
EC=5.3.1.4 HAMAP MF_00519
Gene names
Name:araA HAMAP MF_00519
Ordered Locus Names:Sked_06960
OrganismSanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) [Complete proteome] [HAMAP] EMBL ACZ20653.1
Taxonomic identifier446469 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Sanguibacteraceae › Sanguibacter

Protein attributes

Sequence length502 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519 SAAS SAAS003762

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519 SAAS SAAS003762

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519 SAAS SAAS003762

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519 SAAS SAAS003762

Sequence similarities

Belongs to the arabinose isomerase family. HAMAP MF_00519

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding3071Manganese By similarity HAMAP MF_00519
Metal binding3341Manganese By similarity HAMAP MF_00519
Metal binding3511Manganese By similarity HAMAP MF_00519
Metal binding4501Manganese By similarity HAMAP MF_00519

Sequences

Sequence LengthMass (Da)Tools
D1BB87 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 68BED72D34922DBD

FASTA50254,698
        10         20         30         40         50         60 
MKNPFEGKEI WFLTGSQGLY GEETLQQVAE QSQAIAAAID EAGDVPIRVV WKPVLKDSES 

        70         80         90        100        110        120 
IKRTALEANA DPACIGLVAW MHTFSPAKMW IRGLDALDTP LLHLHTQANV ELPWADIDMD 

       130        140        150        160        170        180 
FMNLNQAAHG DREFGYIQTR MGVPRKTVVG HVSNPAVAAK IGTWSRAAAG FDAVRNLRLA 

       190        200        210        220        230        240 
RFGDNMRNVA VTEGDKTEAE ISLGVSVNTW GVNELVEAVD AVEESVIDAL VAEYEELYDV 

       250        260        270        280        290        300 
APELRAGGER HDALRYGARQ EAGLRSFLEA GDFGAFTTNF EDLGALRQLP GLAVQRLMAE 

       310        320        330        340        350        360 
GYGFGAEGDW KTALLVRAAK VMGYGLPGGA SLMEDYTYDL TPGDEKILGA HMLEVCPSLT 

       370        380        390        400        410        420 
TSRPSLEVHP LGIGGKEDPV RLVFNTDPGP AVVVAMSDMR ERFRLTVNVV DVVEPGHELP 

       430        440        450        460        470        480 
NLPVARAVWK PQPSFAVSAE AWLIAGAAHH TVMSTAVGLE AFQDFSDMAR TELATIDETT 

       490        500 
TSRGFAQELR WNQAYYRLAQ GF

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001819 Genomic DNA. Translation: ACZ20653.1.
RefSeqYP_003313487.1. NC_013521.1.

3D structure databases

ProteinModelPortalD1BB87.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8632333.
GenomeReviewsGene locus Sked_06960 in contig CP001819_GR.
KEGGske:Sked_06960.
PATRIC32389824. VBISanKed123513_0683.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAEVCPTIA.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD1BB87_SANKS
AccessionPrimary (citable) accession number: D1BB87
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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