D1B209 (D1B209_SULD5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Nickel-dependent hydrogenase large subunit EMBL ACZ12129.1

Gene names

Ordered Locus Names:

Sdel_1105 EMBL ACZ12129.1

Organism

Sulfurospirillum deleyianum (strain ATCC 51133 / DSM 6946 / 5175) [Complete proteome] [HAMAP] EMBL ACZ12129.1

Taxonomic identifier

525898 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Epsilonproteobacteria › Campylobacterales › Campylobacteraceae › Sulfurospirillum › Sulfurospirillum deleyianum

Protein attributes

Sequence length	584 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. RuleBase RU003896

Ontologies

Keywords
Ligand	Metal-binding RuleBase RU003896 Nickel RuleBase RU003896
Molecular function	Oxidoreductase RuleBase RU003896
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	ferredoxin hydrogenase activity Inferred from electronic annotation. Source: InterPro nickel cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D1B209 [UniParc]. Last modified January 19, 2010. Version 1. Checksum: 15B7EB6D89CED41E	FASTA	584	64,401
	10 20 30 40 50 60 MSKRIVVDPI TRIEGHLRVE VIVDDNNVVT EAYASSTLWR GIETILKGRD PRDAGFMVQR 70 80 90 100 110 120 ICGVCTYSHY KAGIAAVENA LGIEPPLNAK LTRTLMNCAL FLHDHVVHFY HLHGLDWVDV 130 140 150 160 170 180 VSALKADPHK AAAEAFKYTD APIACGADDL VVVQKRVAEF VKKGNLGPFA NAYWGHATYK 190 200 210 220 230 240 LTPEQNLIAV SHYLKALEMQ RVAAQMMAIF GAKQPHPQSL TVGGVTCIMD LQTPSRLGEY 250 260 270 280 290 300 MTKFKEMAEF VNRAYYADVV MAGLAYANEP SVTGGLGVPN LWTHQEFQVN ASEYLFNSGL 310 320 330 340 350 360 MMGEDVVNLI SGKPFKVQQI DESKITEEAT HAWYKDNAAY HPYEGRQEPN YTGLKDAQTI 370 380 390 400 410 420 NDKGVLAPTK VVDEKGKYTW VKAPRYDGKP LQVGPLANIV VNYALGNKRV KTVVDKFLKD 430 440 450 460 470 480 TGLPISAVAS TLGRTACRML ETKVVADYGL EAFTSLINNL KVDDSTCATY KIDKNKEYKG 490 500 510 520 530 540 RYIGHVPRGT LSHWVKIKNG VIENYQAVVP TTWNASPKDA KGIRGSYEES LIGLKIADLS 550 560 570 580 QPLEIVRLVH SYDPCLACAV HVMDAKGNEM SSYKVNVSGS SCSC

References

[1]

"The complete genome of Sulfurospirillum deleyianum DSM 6946." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Munk A.C., Lu M., Brettin T., Detter J.C., Han C. , Tapia R., Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Aumann P., Schneider S., Lang E., Spring S., Klenk H.P., Eisen J.A. Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51133 / DSM 6946 / 5175.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001816 Genomic DNA. Translation: ACZ12129.1.
RefSeq	YP_003304164.1. NC_013512.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACZ12129; ACZ12129; Sdel_1105.
GeneID	8592643.
KEGG	sdl:Sdel_1105.
PATRIC	32482997. VBISulDel109514_1122.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000278799.
KO	K05922.
OMA	VHFYHLS.
Enzyme and pathway databases
BioCyc	SDEL525898:GHVA-1134-MONOMER.
Family and domain databases
InterPro	IPR001501. Ni-dep_hyd_lsu. IPR018194. Ni-dep_hyd_lsu_Ni_BS. [Graphical view]
Pfam	PF00374. NiFeSe_Hases. 1 hit. [Graphical view]
PROSITE	PS00507. NI_HGENASE_L_1. 1 hit. PS00508. NI_HGENASE_L_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D1B209_SULD5

Accession

Primary (citable) accession number: D1B209

Entry history

Integrated into UniProtKB/TrEMBL:	January 19, 2010
Last sequence update:	January 19, 2010
Last modified:	May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)